The 2.0 version of rSNPBase

Variant report

Variant rs56347736
Chromosome Location chr20:16477866-16477867
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16431400-16508200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr20:16448000-16483600 Weak transcription Pancreas Pancrea
3 chr20:16449400-16500600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr20:16451200-16488400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr20:16451400-16478600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr20:16453600-16508200 Weak transcription Stomach Mucosa stomach
7 chr20:16454800-16483600 Weak transcription Spleen Spleen
8 chr20:16456200-16483800 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr20:16456800-16487600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr20:16456800-16488200 Weak transcription Rectal Smooth Muscle rectum
11 chr20:16458600-16484200 Weak transcription A549 lung
12 chr20:16458800-16480800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr20:16458800-16484000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr20:16458800-16486200 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr20:16460800-16488200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr20:16461000-16491200 Weak transcription Placenta Placenta
17 chr20:16461200-16479600 Weak transcription Stomach Smooth Muscle stomach
18 chr20:16462000-16483800 Weak transcription Primary T cells fromperipheralblood blood
19 chr20:16463000-16498000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr20:16463800-16484000 Weak transcription Gastric stomach
21 chr20:16463800-16495000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr20:16464400-16491400 Weak transcription Fetal Kidney kidney
23 chr20:16464600-16484000 Weak transcription Fetal Lung lung
24 chr20:16465200-16484200 Weak transcription Colon Smooth Muscle Colon
25 chr20:16465400-16488200 Weak transcription Small Intestine intestine
26 chr20:16465800-16488000 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr20:16466000-16488000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr20:16466600-16489600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr20:16467000-16508800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr20:16467400-16483800 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr20:16467400-16484200 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr20:16467400-16488000 Weak transcription H9 Cell Line embryonic stem cell
33 chr20:16467400-16500800 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr20:16467400-16507000 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr20:16467800-16494600 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr20:16468800-16482600 Strong transcription Rectal Mucosa Donor 31 rectum
37 chr20:16469400-16485600 Weak transcription Brain Cingulate Gyrus brain
38 chr20:16469600-16507600 Weak transcription HSMMtube muscle
39 chr20:16469800-16483800 Weak transcription Brain Anterior Caudate brain
40 chr20:16469800-16496800 Weak transcription Brain Angular Gyrus brain
41 chr20:16470000-16483800 Weak transcription Psoas Muscle Psoas
42 chr20:16470000-16484600 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr20:16470000-16486200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr20:16470000-16486600 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr20:16470000-16488200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr20:16470200-16479600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr20:16470200-16508600 Weak transcription NHLF lung
48 chr20:16470800-16496600 Weak transcription Fetal Brain Female brain
49 chr20:16471000-16487200 Weak transcription Fetal Stomach stomach
50 chr20:16471800-16487800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015