Variant report

Variant	rs6111158
Chromosome Location	chr20:16462581-16462582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16455044..16457942-chr20:16460878..16462796,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002911	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13040489	1.00[CHD][hapmap]
rs13041027	1.00[CHD][hapmap]
rs13043684	1.00[CHD][hapmap]
rs13044096	1.00[CHD][hapmap]
rs13045459	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs1555196	0.90[CEU][hapmap]
rs34894115	0.84[EUR][1000 genomes]
rs55892570	0.82[EUR][1000 genomes]
rs56347736	0.84[EUR][1000 genomes]
rs6034493	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6034494	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6034495	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6034498	0.83[MKK][hapmap]
rs6034500	0.90[CEU][hapmap]
rs6043954	1.00[CHD][hapmap]
rs6044003	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6044007	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6044008	0.90[CEU][hapmap]
rs6044012	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6044014	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6044015	0.90[CEU][hapmap];1.00[CHD][hapmap]
rs6044019	1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6044020	0.90[CEU][hapmap];1.00[CHD][hapmap]
rs6075050	1.00[CHD][hapmap]
rs62199772	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7260832	1.00[CHD][hapmap]
rs8124834	1.00[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6111158	C20orf23	cis	multi-tissue	Pritchard

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16410200-16473200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr20:16420800-16471400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr20:16431400-16463000	Weak transcription	Aorta	Aorta
4	chr20:16431400-16508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:16436600-16464800	Weak transcription	Small Intestine	intestine
6	chr20:16440400-16468800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr20:16443600-16468600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr20:16443800-16469600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:16443800-16469600	Weak transcription	Lung	lung
10	chr20:16444000-16466800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr20:16448000-16483600	Weak transcription	Pancreas	Pancrea
12	chr20:16449400-16500600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr20:16451200-16488400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr20:16451400-16478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr20:16453000-16469600	Weak transcription	Ovary	ovary
16	chr20:16453400-16470000	Weak transcription	Esophagus	oesophagus
17	chr20:16453400-16473400	Weak transcription	Left Ventricle	heart
18	chr20:16453600-16471800	Weak transcription	NHEK	skin
19	chr20:16453600-16508200	Weak transcription	Stomach Mucosa	stomach
20	chr20:16454400-16467200	Weak transcription	K562	blood
21	chr20:16454800-16483600	Weak transcription	Spleen	Spleen
22	chr20:16455400-16467600	Weak transcription	Psoas Muscle	Psoas
23	chr20:16455600-16468800	Weak transcription	Colonic Mucosa	Colon
24	chr20:16456200-16483800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr20:16456400-16468600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr20:16456800-16463800	Weak transcription	Fetal Lung	lung
27	chr20:16456800-16464000	Weak transcription	Fetal Muscle Leg	muscle
28	chr20:16456800-16465000	Weak transcription	Brain Anterior Caudate	brain
29	chr20:16456800-16465600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr20:16456800-16465800	Weak transcription	HSMMtube	muscle
31	chr20:16456800-16466600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr20:16456800-16467200	Weak transcription	Fetal Heart	heart
33	chr20:16456800-16468800	Weak transcription	Brain Substantia Nigra	brain
34	chr20:16456800-16469200	Weak transcription	Brain Hippocampus Middle	brain
35	chr20:16456800-16471600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr20:16456800-16472200	Weak transcription	Liver	Liver
37	chr20:16456800-16473800	Weak transcription	Primary B cells from cord blood	blood
38	chr20:16456800-16487600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr20:16456800-16488200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr20:16458600-16464400	Weak transcription	Colon Smooth Muscle	Colon
41	chr20:16458600-16476400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr20:16458600-16484200	Weak transcription	A549	lung
43	chr20:16458800-16464200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr20:16458800-16471200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr20:16458800-16471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr20:16458800-16471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr20:16458800-16477400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr20:16458800-16480800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr20:16458800-16484000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr20:16458800-16486200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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