Variant report

Variant	rs6034495
Chromosome Location	chr20:16460485-16460486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1002911	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13045459	0.81[EUR][1000 genomes]
rs34894115	0.81[EUR][1000 genomes]
rs56347736	0.81[EUR][1000 genomes]
rs6034493	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6034494	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6044003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6044007	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6044012	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6044014	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6044019	0.94[EUR][1000 genomes]
rs6111158	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62199772	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16410200-16473200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr20:16420800-16471400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr20:16431400-16463000	Weak transcription	Aorta	Aorta
4	chr20:16431400-16508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:16431800-16462200	Weak transcription	Primary T cells from cord blood	blood
6	chr20:16436600-16464800	Weak transcription	Small Intestine	intestine
7	chr20:16440400-16468800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr20:16443600-16468600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr20:16443800-16469600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:16443800-16469600	Weak transcription	Lung	lung
11	chr20:16444000-16466800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr20:16448000-16483600	Weak transcription	Pancreas	Pancrea
13	chr20:16449400-16500600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr20:16451200-16488400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr20:16451400-16478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr20:16453000-16469600	Weak transcription	Ovary	ovary
17	chr20:16453400-16470000	Weak transcription	Esophagus	oesophagus
18	chr20:16453400-16473400	Weak transcription	Left Ventricle	heart
19	chr20:16453600-16471800	Weak transcription	NHEK	skin
20	chr20:16453600-16508200	Weak transcription	Stomach Mucosa	stomach
21	chr20:16454400-16467200	Weak transcription	K562	blood
22	chr20:16454800-16483600	Weak transcription	Spleen	Spleen
23	chr20:16455400-16467600	Weak transcription	Psoas Muscle	Psoas
24	chr20:16455600-16468800	Weak transcription	Colonic Mucosa	Colon
25	chr20:16456200-16460600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr20:16456200-16483800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr20:16456400-16468600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr20:16456800-16463800	Weak transcription	Fetal Lung	lung
29	chr20:16456800-16464000	Weak transcription	Fetal Muscle Leg	muscle
30	chr20:16456800-16465000	Weak transcription	Brain Anterior Caudate	brain
31	chr20:16456800-16465600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr20:16456800-16465800	Weak transcription	HSMMtube	muscle
33	chr20:16456800-16466600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr20:16456800-16467200	Weak transcription	Fetal Heart	heart
35	chr20:16456800-16468800	Weak transcription	Brain Substantia Nigra	brain
36	chr20:16456800-16469200	Weak transcription	Brain Hippocampus Middle	brain
37	chr20:16456800-16471600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr20:16456800-16472200	Weak transcription	Liver	Liver
39	chr20:16456800-16473800	Weak transcription	Primary B cells from cord blood	blood
40	chr20:16456800-16487600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr20:16456800-16488200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr20:16458600-16464400	Weak transcription	Colon Smooth Muscle	Colon
43	chr20:16458600-16476400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr20:16458600-16484200	Weak transcription	A549	lung
45	chr20:16458800-16461600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr20:16458800-16462200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr20:16458800-16464200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr20:16458800-16471200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr20:16458800-16471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr20:16458800-16471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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