Variant report

Variant	rs56351451
Chromosome Location	chr11:105921407-105921408
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17093811	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61080184	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72975098	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72981217	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72981224	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72981237	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72981245	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56351451	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105920600-105931800	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:105920800-105947000	Weak transcription	Ovary	ovary
3	chr11:105921000-105939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:105921400-105922600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:105921400-105925800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:105921400-105931600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:105921400-105931800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:105921400-105931800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:105921400-105946800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:105921400-105946800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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