Variant report

Variant	rs72981224
Chromosome Location	chr11:105885953-105885954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105885814..105889172-chr11:105892054..105893913,3	MCF-7	breast:
2	chr11:105884249..105887015-chr11:105888601..105891455,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170903	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17093811	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56351451	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61080184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975098	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72981217	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981237	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981245	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527285	chr11:105884085-105891599	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv526898	chr11:105884085-105893494	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
2	chr11:105865000-105890400	Weak transcription	A549	lung
3	chr11:105865200-105891600	Weak transcription	Hela-S3	cervix
4	chr11:105871000-105892200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:105877200-105886800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:105877600-105892400	Weak transcription	Spleen	Spleen
7	chr11:105877800-105892400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:105878600-105892400	Weak transcription	Stomach Mucosa	stomach
9	chr11:105880600-105891600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:105880800-105888600	Weak transcription	Right Ventricle	heart
11	chr11:105880800-105891600	Weak transcription	Fetal Intestine Small	intestine
12	chr11:105880800-105892400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:105881400-105887000	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:105881400-105892000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:105881600-105887000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:105881600-105887000	Weak transcription	Small Intestine	intestine
17	chr11:105881600-105888200	Enhancers	Brain Hippocampus Middle	brain
18	chr11:105881600-105889800	Weak transcription	NHEK	skin
19	chr11:105881600-105890200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:105881600-105890200	Weak transcription	Fetal Kidney	kidney
21	chr11:105881600-105890200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:105881600-105890800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:105881600-105891600	Weak transcription	Fetal Intestine Large	intestine
24	chr11:105881600-105891800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:105881600-105892000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:105881800-105886200	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr11:105881800-105887000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:105881800-105888600	Weak transcription	HMEC	breast
29	chr11:105881800-105889200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:105881800-105889200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:105881800-105891600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:105881800-105891800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:105881800-105892000	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:105882000-105886000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:105882000-105891800	Weak transcription	Primary B cells from cord blood	blood
36	chr11:105882000-105891800	Weak transcription	Thymus	Thymus
37	chr11:105882000-105892000	Weak transcription	Aorta	Aorta
38	chr11:105882200-105886600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:105882200-105887000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:105882200-105887600	Weak transcription	Fetal Stomach	stomach
41	chr11:105882200-105889800	Weak transcription	Right Atrium	heart
42	chr11:105882200-105890200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:105882200-105891600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:105882200-105891800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:105882200-105891800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:105882200-105892000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:105882200-105892400	Weak transcription	Gastric	stomach
48	chr11:105882200-105892400	Weak transcription	Lung	lung
49	chr11:105882400-105887800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:105882400-105889200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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