Variant report

Variant	rs72981237
Chromosome Location	chr11:105892510-105892511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:105890839..105893464-chr11:105945938..105948303,3	K562	blood:
2	chr11:105892451..105892951-chr6:31703879..31704800,2	Hela-S3	cervix:
3	chr11:105889494..105894632-chr11:105945234..105949346,5	K562	blood:

Variant related genes	Relation type
ENSG00000149313	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000182359	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17093811	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56351451	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61080184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72981217	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981245	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526898	chr11:105884085-105893494	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105889800-105893600	Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr11:105890400-105893800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr11:105891400-105892600	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr11:105891400-105893600	Active TSS	Right Ventricle	heart
5	chr11:105891400-105893800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:105891600-105892600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr11:105891600-105892600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr11:105891600-105892800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr11:105891600-105893400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr11:105891600-105893600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:105891600-105893800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:105891600-105893800	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr11:105891600-105893800	Active TSS	Psoas Muscle	Psoas
14	chr11:105891600-105893800	Active TSS	Right Atrium	heart
15	chr11:105891600-105894000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:105891800-105892600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:105891800-105892600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:105891800-105892600	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr11:105891800-105892800	Active TSS	Primary T cells fromperipheralblood	blood
20	chr11:105891800-105892800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr11:105891800-105893400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:105891800-105893600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr11:105891800-105893600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:105891800-105893600	Active TSS	Fetal Muscle Leg	muscle
25	chr11:105891800-105893600	Active TSS	HSMM	muscle
26	chr11:105891800-105893800	Active TSS	NHLF	lung
27	chr11:105892000-105892600	Flanking Active TSS	Primary B cells from peripheral blood	blood
28	chr11:105892000-105892600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr11:105892000-105892600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:105892000-105892600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:105892000-105892600	Active TSS	Brain Germinal Matrix	brain
32	chr11:105892000-105892800	Flanking Active TSS	Liver	Liver
33	chr11:105892000-105893000	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr11:105892000-105893200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr11:105892000-105893200	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr11:105892000-105893400	Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr11:105892000-105893400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:105892000-105893400	Active TSS	Fetal Thymus	thymus
39	chr11:105892000-105893600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:105892000-105893600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:105892000-105893600	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr11:105892000-105893600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:105892000-105893600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:105892000-105893600	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr11:105892000-105893600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:105892000-105893600	Active TSS	Brain Anterior Caudate	brain
47	chr11:105892000-105893600	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr11:105892000-105893600	Active TSS	Fetal Intestine Large	intestine
49	chr11:105892000-105893600	Active TSS	Ovary	ovary
50	chr11:105892000-105893600	Active TSS	Placenta Amnion	Placenta Amnion

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