Variant report

Variant	rs56355746
Chromosome Location	chr17:38092065-38092066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38090703..38093615-chr17:38109038..38110854,2	K562	blood:
2	chr17:38092033..38093740-chr17:38094548..38098129,3	K562	blood:
3	chr17:38090309..38092943-chr17:38096852..38100190,3	MCF-7	breast:
4	chr17:38091500..38094423-chr17:38107517..38109034,2	MCF-7	breast:
5	chr17:38081663..38087482-chr17:38088161..38094892,8	K562	blood:
6	chr17:38091454..38094190-chr17:38099108..38101238,2	K562	blood:
7	chr17:38092013..38093692-chr17:38095886..38098129,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC3C-1	chr17:38092055-38092147	ENSG00000264968.1

No data

Variant related genes	Relation type
ENSG00000172057	Chromatin interaction
ENSG00000264968	Chromatin interaction
ENSG00000204913	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56068869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258044	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73985235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73985236	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73985237	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38085000-38095800	Weak transcription	Primary T cells from cord blood	blood
2	chr17:38085200-38092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:38085400-38095800	Weak transcription	Brain Substantia Nigra	brain
4	chr17:38085400-38096000	Weak transcription	Pancreas	Pancrea
5	chr17:38085600-38094400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr17:38085600-38095600	Weak transcription	Fetal Intestine Small	intestine
7	chr17:38085800-38096000	Weak transcription	Brain Hippocampus Middle	brain
8	chr17:38086000-38095600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr17:38086200-38095600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr17:38086400-38095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:38086800-38095200	Weak transcription	NHLF	lung
12	chr17:38090000-38092600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr17:38090400-38093800	Weak transcription	GM12878-XiMat	blood
14	chr17:38090400-38096000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr17:38090600-38094400	Weak transcription	Fetal Thymus	thymus
16	chr17:38090800-38092200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:38090800-38092800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr17:38090800-38093800	Weak transcription	Fetal Kidney	kidney
19	chr17:38090800-38095400	Weak transcription	A549	lung
20	chr17:38090800-38095600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:38091000-38092200	Weak transcription	Stomach Mucosa	stomach
22	chr17:38091000-38092200	Weak transcription	NH-A	brain
23	chr17:38091000-38092400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr17:38091000-38093200	Enhancers	HepG2	liver
25	chr17:38091600-38097800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr17:38091800-38094400	Weak transcription	Right Ventricle	heart
27	chr17:38092000-38092200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr17:38092000-38092400	Weak transcription	Left Ventricle	heart
29	chr17:38092000-38092600	Enhancers	HSMMtube	muscle
30	chr17:38092000-38092600	Enhancers	K562	blood
31	chr17:38092000-38092800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr17:38092000-38092800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr17:38092000-38092800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr17:38092000-38092800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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