Variant report

Variant	rs73985236
Chromosome Location	chr17:38111321-38111322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38107392..38113362-chr17:38135377..38138663,7	K562	blood:
2	chr17:38109945..38111451-chr17:38115405..38117518,2	K562	blood:
3	chr17:38108595..38111573-chr17:38115257..38117518,3	K562	blood:

Variant related genes	Relation type
ENSG00000108344	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56068869	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258044	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56355746	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73985235	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73985237	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38110000-38115400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr17:38110000-38115400	Weak transcription	Osteobl	bone
3	chr17:38110000-38118800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:38110200-38111400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr17:38110200-38111400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr17:38110200-38111400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:38110200-38111400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:38110200-38111400	Enhancers	K562	blood
9	chr17:38110200-38112200	Weak transcription	Fetal Muscle Leg	muscle
10	chr17:38110200-38115000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr17:38110200-38115000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr17:38110200-38115000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr17:38110200-38115000	Weak transcription	Colonic Mucosa	Colon
14	chr17:38110200-38115000	Weak transcription	NHEK	skin
15	chr17:38110200-38115200	Weak transcription	Primary T cells from cord blood	blood
16	chr17:38110200-38115200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:38110200-38115200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr17:38110200-38115200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:38110200-38115200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:38110200-38115200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:38110200-38115200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr17:38110200-38115200	Weak transcription	Adipose Nuclei	Adipose
23	chr17:38110200-38115200	Weak transcription	Liver	Liver
24	chr17:38110200-38115200	Weak transcription	Brain Angular Gyrus	brain
25	chr17:38110200-38115200	Weak transcription	Colon Smooth Muscle	Colon
26	chr17:38110200-38115200	Weak transcription	Fetal Intestine Large	intestine
27	chr17:38110200-38115200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr17:38110200-38115200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr17:38110200-38115200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr17:38110200-38115200	Weak transcription	HMEC	breast
31	chr17:38110200-38115200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr17:38110200-38115400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr17:38110200-38115400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr17:38110200-38115400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:38110200-38115400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr17:38110200-38115400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr17:38110200-38115400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr17:38110200-38115400	Weak transcription	Fetal Intestine Small	intestine
39	chr17:38110200-38115400	Weak transcription	Stomach Mucosa	stomach
40	chr17:38110200-38115400	Weak transcription	Hela-S3	cervix
41	chr17:38110200-38116600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr17:38110200-38118600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr17:38110200-38118600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr17:38110400-38111400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr17:38110400-38111400	Enhancers	Dnd41	blood
46	chr17:38110400-38111600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr17:38110400-38115200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr17:38110400-38115200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr17:38110400-38115200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr17:38110400-38115200	Weak transcription	Brain Inferior Temporal Lobe	brain

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