Variant report

Variant	rs56378596
Chromosome Location	chr17:66589250-66589251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66589100..66590786-chr17:66609311..66611164,2	MCF-7	breast:
2	chr17:66582830..66585296-chr17:66588108..66590010,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1116782	0.81[ASN][1000 genomes]
rs17702546	0.80[ASN][1000 genomes]
rs35002536	0.80[ASN][1000 genomes]
rs3815357	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62087515	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8077301	0.80[ASN][1000 genomes]
rs986099	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66572200-66591800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:66577200-66592600	Weak transcription	Right Ventricle	heart
3	chr17:66578200-66594000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr17:66581400-66590400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:66582000-66591800	Weak transcription	Left Ventricle	heart
6	chr17:66582200-66592600	Weak transcription	Gastric	stomach
7	chr17:66585400-66592800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr17:66585400-66594200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr17:66585600-66590000	Weak transcription	Fetal Thymus	thymus
10	chr17:66585600-66591400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:66585600-66591600	Weak transcription	Aorta	Aorta
12	chr17:66585600-66591600	Weak transcription	Lung	lung
13	chr17:66586600-66591200	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr17:66586600-66591200	Weak transcription	Spleen	Spleen
15	chr17:66587200-66591200	Weak transcription	HepG2	liver
16	chr17:66587800-66589600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:66587800-66590200	Enhancers	Fetal Stomach	stomach
18	chr17:66587800-66594000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr17:66587800-66594400	Enhancers	NHDF-Ad	bronchial
20	chr17:66588000-66590200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:66588000-66590800	Enhancers	Adipose Nuclei	Adipose
22	chr17:66588000-66593200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr17:66588200-66590200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr17:66588200-66590200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr17:66588200-66591200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr17:66588400-66593800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr17:66588400-66594400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr17:66588600-66590000	Weak transcription	Colon Smooth Muscle	Colon
29	chr17:66588600-66590800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr17:66588600-66592400	Enhancers	Liver	Liver
31	chr17:66588600-66593000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr17:66588800-66590200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr17:66588800-66590800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr17:66588800-66593800	Weak transcription	Placenta	Placenta
35	chr17:66589000-66589400	Enhancers	Brain Angular Gyrus	brain
36	chr17:66589000-66589600	Enhancers	Brain Cingulate Gyrus	brain
37	chr17:66589000-66589600	Enhancers	Fetal Heart	heart
38	chr17:66589000-66589600	Enhancers	Ovary	ovary
39	chr17:66589000-66590000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr17:66589000-66590000	Enhancers	HSMMtube	muscle
41	chr17:66589000-66590200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr17:66589200-66589400	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr17:66589200-66589400	Bivalent Enhancer	HMEC	breast
44	chr17:66589200-66589400	Flanking Active TSS	Osteobl	bone
45	chr17:66589200-66589600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr17:66589200-66590000	Enhancers	Fetal Lung	lung
47	chr17:66589200-66590200	Enhancers	Fetal Kidney	kidney
48	chr17:66589200-66591800	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links