Variant report

Variant	rs62087515
Chromosome Location	chr17:66594967-66594968
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1116782	0.84[ASN][1000 genomes]
rs17702546	0.83[ASN][1000 genomes]
rs17702693	0.83[ASN][1000 genomes]
rs28665123	0.83[ASN][1000 genomes]
rs35002536	0.83[ASN][1000 genomes]
rs3815357	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56378596	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8077301	0.84[ASN][1000 genomes]
rs986099	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9896434	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66589400-66595800	Weak transcription	Brain Angular Gyrus	brain
2	chr17:66589600-66595800	Weak transcription	Ovary	ovary
3	chr17:66590200-66595200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr17:66590600-66595200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:66591400-66595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:66591400-66595800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr17:66591800-66595200	Weak transcription	Brain Hippocampus Middle	brain
8	chr17:66592000-66595600	Weak transcription	Right Atrium	heart
9	chr17:66592600-66595600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr17:66592800-66595000	Weak transcription	Spleen	Spleen
11	chr17:66592800-66595600	Weak transcription	Lung	lung
12	chr17:66593000-66595600	Weak transcription	Gastric	stomach
13	chr17:66593000-66595800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:66593000-66595800	Weak transcription	Left Ventricle	heart
15	chr17:66593000-66595800	Weak transcription	Right Ventricle	heart
16	chr17:66593000-66596000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr17:66593800-66595800	Active TSS	Placenta	Placenta
18	chr17:66593800-66597800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr17:66594000-66595000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr17:66594000-66595200	Flanking Active TSS	Osteobl	bone
21	chr17:66594000-66595600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
22	chr17:66594000-66598000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr17:66594200-66595000	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr17:66594200-66595000	Enhancers	Fetal Intestine Small	intestine
25	chr17:66594200-66595200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr17:66594200-66595200	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr17:66594200-66596400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr17:66594200-66597600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr17:66594200-66597600	Active TSS	Liver	Liver
30	chr17:66594400-66595000	Enhancers	Fetal Kidney	kidney
31	chr17:66594400-66595200	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr17:66594400-66595200	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr17:66594400-66595200	Enhancers	Fetal Heart	heart
34	chr17:66594400-66595400	Active TSS	H1 Cell Line	embryonic stem cell
35	chr17:66594400-66596000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
36	chr17:66594600-66595000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:66594600-66597800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr17:66594800-66595000	Bivalent Enhancer	HepG2	liver
39	chr17:66594800-66595400	Active TSS	Fetal Intestine Large	intestine
40	chr17:66594800-66595400	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr17:66594800-66595600	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
42	chr17:66594800-66595600	Active TSS	NHDF-Ad	bronchial
43	chr17:66594800-66597800	Bivalent/Poised TSS	Thymus	Thymus
44	chr17:66594800-66598000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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