Variant report

Variant	rs986099
Chromosome Location	chr17:66596463-66596464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1116782	0.84[ASN][1000 genomes]
rs17702546	0.83[ASN][1000 genomes]
rs17702693	0.83[ASN][1000 genomes]
rs28665123	0.83[ASN][1000 genomes]
rs35002536	0.83[ASN][1000 genomes]
rs3815357	0.85[ASN][1000 genomes]
rs56378596	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62087515	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077301	0.84[ASN][1000 genomes]
rs9896434	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66593800-66597800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr17:66594000-66598000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr17:66594200-66597600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:66594200-66597600	Active TSS	Liver	Liver
5	chr17:66594600-66597800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr17:66594800-66597800	Bivalent/Poised TSS	Thymus	Thymus
7	chr17:66594800-66598000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr17:66595000-66597600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:66595000-66597800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr17:66595200-66597400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:66595200-66597600	Active TSS	Fetal Kidney	kidney
12	chr17:66595200-66597800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:66595200-66598000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
14	chr17:66595400-66597800	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr17:66595600-66596600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
16	chr17:66595600-66597400	Active TSS	Right Atrium	heart
17	chr17:66595600-66597600	Active TSS	Gastric	stomach
18	chr17:66595600-66597600	Active TSS	Lung	lung
19	chr17:66595600-66597600	Bivalent/Poised TSS	NHLF	lung
20	chr17:66595600-66597800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr17:66595600-66598000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr17:66595800-66596600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
23	chr17:66595800-66596600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
24	chr17:66595800-66596600	Bivalent/Poised TSS	Small Intestine	intestine
25	chr17:66595800-66596800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:66595800-66596800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
27	chr17:66595800-66597000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
28	chr17:66595800-66597000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr17:66595800-66597200	Bivalent Enhancer	Fetal Brain Male	brain
30	chr17:66595800-66597200	Bivalent/Poised TSS	Stomach Mucosa	stomach
31	chr17:66595800-66597400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr17:66595800-66597400	Active TSS	Esophagus	oesophagus
33	chr17:66595800-66597400	Bivalent/Poised TSS	Fetal Thymus	thymus
34	chr17:66595800-66597600	Active TSS	Brain Angular Gyrus	brain
35	chr17:66595800-66597600	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr17:66595800-66597600	Active TSS	Brain Substantia Nigra	brain
37	chr17:66595800-66597600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
38	chr17:66595800-66597600	Active TSS	Left Ventricle	heart
39	chr17:66595800-66597600	Active TSS	Ovary	ovary
40	chr17:66595800-66597600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
41	chr17:66595800-66597600	Active TSS	HSMMtube	muscle
42	chr17:66595800-66597800	Active TSS	Brain Anterior Caudate	brain
43	chr17:66595800-66597800	Active TSS	Right Ventricle	heart
44	chr17:66596000-66596600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
45	chr17:66596000-66596600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
46	chr17:66596000-66596600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr17:66596000-66596600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
48	chr17:66596000-66596600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
49	chr17:66596000-66596600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr17:66596000-66596600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach

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