Variant report

Variant	rs56380806
Chromosome Location	chr1:85233058-85233059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1417296	0.90[AFR][1000 genomes]
rs1417297	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1417299	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4907094	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55852981	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57744031	0.90[AFR][1000 genomes]
rs58803630	0.84[AFR][1000 genomes]
rs59493945	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61770401	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61770407	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61770414	0.90[AFR][1000 genomes]
rs9659298	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9661368	0.90[AFR][1000 genomes]
rs9661377	0.90[AFR][1000 genomes]
rs9661394	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947190	chr1:85229432-85235799	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85225800-85233600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:85228800-85238200	Weak transcription	Stomach Mucosa	stomach
3	chr1:85230600-85234400	Weak transcription	Fetal Brain Male	brain
4	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:85232600-85237800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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