Variant report

Variant	rs61770407
Chromosome Location	chr1:85233842-85233843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1417297	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1417299	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4907094	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55852981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56380806	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59493945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61770401	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9659298	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9661394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947190	chr1:85229432-85235799	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85228800-85238200	Weak transcription	Stomach Mucosa	stomach
2	chr1:85230600-85234400	Weak transcription	Fetal Brain Male	brain
3	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:85232600-85237800	Weak transcription	Fetal Heart	heart
5	chr1:85233600-85234200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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