Variant report

Variant	rs1417297
Chromosome Location	chr1:85236726-85236727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85235556..85238288-chr20:47536912..47539805,2	MCF-7	breast:
2	chr1:85039601..85041323-chr1:85236124..85237714,2	K562	blood:
3	chr1:85236447..85238447-chr1:85246422..85249136,2	K562	blood:

Variant related genes	Relation type
ENSG00000124198	Chromatin interaction
ENSG00000117151	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1077776	1.00[ASN][1000 genomes]
rs1077777	1.00[ASN][1000 genomes]
rs1325274	1.00[ASN][1000 genomes]
rs1417296	1.00[ASN][1000 genomes]
rs1417299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115425	1.00[ASN][1000 genomes]
rs17115551	1.00[ASN][1000 genomes]
rs17115615	1.00[ASN][1000 genomes]
rs17116652	1.00[ASN][1000 genomes]
rs17368823	1.00[ASN][1000 genomes]
rs17377380	1.00[ASN][1000 genomes]
rs2025689	1.00[ASN][1000 genomes]
rs2389776	1.00[ASN][1000 genomes]
rs2389777	1.00[ASN][1000 genomes]
rs2389785	1.00[ASN][1000 genomes]
rs4484942	1.00[ASN][1000 genomes]
rs4907094	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907100	1.00[ASN][1000 genomes]
rs55852981	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56380806	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57744031	1.00[ASN][1000 genomes]
rs57925971	1.00[ASN][1000 genomes]
rs58803630	1.00[ASN][1000 genomes]
rs59493945	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59536255	1.00[ASN][1000 genomes]
rs61768760	1.00[ASN][1000 genomes]
rs61770401	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770406	1.00[ASN][1000 genomes]
rs61770407	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61770408	1.00[ASN][1000 genomes]
rs61770411	1.00[ASN][1000 genomes]
rs61770414	1.00[ASN][1000 genomes]
rs61770417	1.00[ASN][1000 genomes]
rs61770418	1.00[ASN][1000 genomes]
rs61770419	1.00[ASN][1000 genomes]
rs61770433	1.00[ASN][1000 genomes]
rs61770434	1.00[ASN][1000 genomes]
rs61770435	1.00[ASN][1000 genomes]
rs61770436	1.00[ASN][1000 genomes]
rs61770437	1.00[ASN][1000 genomes]
rs61770439	1.00[ASN][1000 genomes]
rs61770440	1.00[ASN][1000 genomes]
rs61770441	1.00[ASN][1000 genomes]
rs61770442	1.00[ASN][1000 genomes]
rs61770443	1.00[ASN][1000 genomes]
rs61770444	1.00[ASN][1000 genomes]
rs61770446	1.00[ASN][1000 genomes]
rs72718785	1.00[ASN][1000 genomes]
rs72942437	1.00[ASN][1000 genomes]
rs9659298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9660220	1.00[ASN][1000 genomes]
rs9660249	1.00[ASN][1000 genomes]
rs9661368	1.00[ASN][1000 genomes]
rs9661377	1.00[ASN][1000 genomes]
rs9661394	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9728153	1.00[ASN][1000 genomes]
rs9728717	1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85228800-85238200	Weak transcription	Stomach Mucosa	stomach
2	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:85232600-85237800	Weak transcription	Fetal Heart	heart
4	chr1:85234800-85237600	Weak transcription	Fetal Brain Male	brain
5	chr1:85235600-85240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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