The 2.0 version of rSNPBase

Variant report

Variant rs2389785
Chromosome Location chr1:85300618-85300619
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:25 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85289400-85330800 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:85291200-85301000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:85296600-85312800 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr1:85298800-85301200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:85298800-85301400 Enhancers Stomach Mucosa stomach
6 chr1:85298800-85301600 Enhancers Hela-S3 cervix
7 chr1:85299200-85301600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:85299200-85301600 Enhancers HMEC breast
9 chr1:85299400-85300800 Enhancers NHDF-Ad bronchial
10 chr1:85299400-85301000 Enhancers Muscle Satellite Cultured Cells --
11 chr1:85299400-85301200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr1:85299400-85301600 Enhancers Breast Myoepithelial Primary Cells Breast
13 chr1:85299400-85302000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr1:85299600-85305200 Weak transcription Pancreas Pancrea
15 chr1:85300000-85301000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr1:85300000-85301000 Enhancers Osteobl bone
17 chr1:85300000-85301600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:85300200-85301000 Enhancers NHLF lung
19 chr1:85300200-85301200 Enhancers Gastric stomach
20 chr1:85300400-85301000 Enhancers Sigmoid Colon Sigmoid Colon
21 chr1:85300400-85301200 Enhancers Aorta Aorta
22 chr1:85300400-85301400 Enhancers Fetal Heart heart
23 chr1:85300400-85301400 Enhancers NH-A brain
24 chr1:85300400-85301600 Flanking Active TSS NHEK skin
25 chr1:85300600-85304600 Weak transcription Liver Liver

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Last update: Aug 31, 2015