Variant report

Variant	rs2389776
Chromosome Location	chr1:85240107-85240108
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85238570..85240771-chr1:85245143..85248001,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10493756	1.00[YRI][hapmap]
rs1077776	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325273	1.00[YRI][hapmap]
rs1325274	1.00[ASN][1000 genomes]
rs1417296	1.00[ASN][1000 genomes]
rs1417297	1.00[ASN][1000 genomes]
rs1417299	1.00[ASN][1000 genomes]
rs17115425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115551	1.00[ASN][1000 genomes]
rs17115615	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116652	1.00[ASN][1000 genomes]
rs17368823	1.00[ASN][1000 genomes]
rs17377380	1.00[ASN][1000 genomes]
rs2025689	1.00[ASN][1000 genomes]
rs2389777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389785	1.00[ASN][1000 genomes]
rs4484942	1.00[ASN][1000 genomes]
rs4907094	1.00[ASN][1000 genomes]
rs4907100	1.00[ASN][1000 genomes]
rs55852981	1.00[ASN][1000 genomes]
rs57744031	1.00[ASN][1000 genomes]
rs57925971	1.00[ASN][1000 genomes]
rs58803630	1.00[ASN][1000 genomes]
rs59493945	1.00[ASN][1000 genomes]
rs59536255	1.00[ASN][1000 genomes]
rs61768760	1.00[ASN][1000 genomes]
rs61770401	1.00[ASN][1000 genomes]
rs61770406	1.00[ASN][1000 genomes]
rs61770408	1.00[ASN][1000 genomes]
rs61770411	1.00[ASN][1000 genomes]
rs61770414	1.00[ASN][1000 genomes]
rs61770417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61770433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770436	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770437	1.00[ASN][1000 genomes]
rs61770439	1.00[ASN][1000 genomes]
rs61770440	1.00[ASN][1000 genomes]
rs61770441	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770442	1.00[ASN][1000 genomes]
rs61770443	1.00[ASN][1000 genomes]
rs61770444	1.00[ASN][1000 genomes]
rs61770446	1.00[ASN][1000 genomes]
rs72718785	1.00[ASN][1000 genomes]
rs72942437	1.00[ASN][1000 genomes]
rs9324144	1.00[YRI][hapmap]
rs9659298	1.00[ASN][1000 genomes]
rs9660220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9660249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9661368	1.00[ASN][1000 genomes]
rs9661377	1.00[ASN][1000 genomes]
rs9661394	1.00[ASN][1000 genomes]
rs9726937	1.00[YRI][hapmap]
rs9728153	1.00[ASN][1000 genomes]
rs9728717	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516470	chr1:85239564-85241298	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85235600-85240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:85238000-85240800	Enhancers	Fetal Brain Female	brain
4	chr1:85238000-85241200	Enhancers	HMEC	breast
5	chr1:85238200-85240200	Enhancers	Esophagus	oesophagus
6	chr1:85238200-85240600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:85238200-85241000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:85238600-85242000	Weak transcription	Osteobl	bone
9	chr1:85239000-85240200	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:85239000-85241400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:85239200-85244800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:85239400-85240600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:85239400-85240800	Weak transcription	Brain Germinal Matrix	brain
14	chr1:85239600-85241200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:85239600-85241200	Enhancers	Brain Anterior Caudate	brain
16	chr1:85239600-85241200	Enhancers	Pancreas	Pancrea
17	chr1:85239800-85240200	Enhancers	Brain Cingulate Gyrus	brain
18	chr1:85239800-85240400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:85239800-85240800	Enhancers	Fetal Brain Male	brain
20	chr1:85239800-85241200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr1:85240000-85241200	Weak transcription	NHEK	skin
22	chr1:85240000-85241600	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links