Variant report

Variant	rs61770417
Chromosome Location	chr1:85238505-85238506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84853389..84854043-chr1:85237940..85238620,2	K562	blood:
2	chr1:85218958..85219484-chr1:85237990..85238685,2	K562	blood:
3	chr1:85134034..85134566-chr1:85237896..85238656,2	MCF-7	breast:
4	chr1:85238005..85238693-chr1:85400870..85401458,2	K562	blood:
5	chr1:85086327..85087159-chr1:85237711..85238512,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1077776	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325274	1.00[ASN][1000 genomes]
rs1417296	1.00[ASN][1000 genomes]
rs1417297	1.00[ASN][1000 genomes]
rs1417299	1.00[ASN][1000 genomes]
rs17115425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115551	1.00[ASN][1000 genomes]
rs17115615	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116652	1.00[ASN][1000 genomes]
rs17368823	1.00[ASN][1000 genomes]
rs17377380	1.00[ASN][1000 genomes]
rs2025689	1.00[ASN][1000 genomes]
rs2389776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389785	1.00[ASN][1000 genomes]
rs4484942	1.00[ASN][1000 genomes]
rs4907094	1.00[ASN][1000 genomes]
rs4907100	1.00[ASN][1000 genomes]
rs55852981	1.00[ASN][1000 genomes]
rs57744031	1.00[ASN][1000 genomes]
rs57925971	1.00[ASN][1000 genomes]
rs58803630	1.00[ASN][1000 genomes]
rs59493945	1.00[ASN][1000 genomes]
rs59536255	1.00[ASN][1000 genomes]
rs61768760	1.00[ASN][1000 genomes]
rs61770401	1.00[ASN][1000 genomes]
rs61770406	1.00[ASN][1000 genomes]
rs61770408	1.00[ASN][1000 genomes]
rs61770411	1.00[ASN][1000 genomes]
rs61770414	1.00[ASN][1000 genomes]
rs61770418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61770433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770436	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770437	1.00[ASN][1000 genomes]
rs61770439	1.00[ASN][1000 genomes]
rs61770440	1.00[ASN][1000 genomes]
rs61770441	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770442	1.00[ASN][1000 genomes]
rs61770443	1.00[ASN][1000 genomes]
rs61770444	1.00[ASN][1000 genomes]
rs61770446	1.00[ASN][1000 genomes]
rs72718785	1.00[ASN][1000 genomes]
rs72942437	1.00[ASN][1000 genomes]
rs9659298	1.00[ASN][1000 genomes]
rs9660220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9660249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9661368	1.00[ASN][1000 genomes]
rs9661377	1.00[ASN][1000 genomes]
rs9661394	1.00[ASN][1000 genomes]
rs9728153	1.00[ASN][1000 genomes]
rs9728717	1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85235600-85240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:85237600-85238600	Enhancers	Fetal Brain Male	brain
4	chr1:85237800-85239200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:85237800-85239200	Enhancers	Fetal Heart	heart
6	chr1:85237800-85239800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:85237800-85240000	Enhancers	NHEK	skin
8	chr1:85238000-85239600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:85238000-85239800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:85238000-85240800	Enhancers	Fetal Brain Female	brain
11	chr1:85238000-85241200	Enhancers	HMEC	breast
12	chr1:85238200-85238600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:85238200-85238600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:85238200-85238600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:85238200-85238600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:85238200-85238600	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:85238200-85238600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:85238200-85238600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:85238200-85238600	Enhancers	NHDF-Ad	bronchial
20	chr1:85238200-85238600	Enhancers	NHLF	lung
21	chr1:85238200-85238600	Enhancers	Osteobl	bone
22	chr1:85238200-85239000	Enhancers	Brain Hippocampus Middle	brain
23	chr1:85238200-85239000	Enhancers	Stomach Smooth Muscle	stomach
24	chr1:85238200-85239200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:85238200-85239400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:85238200-85239400	Enhancers	Brain Germinal Matrix	brain
27	chr1:85238200-85239800	Enhancers	Fetal Intestine Small	intestine
28	chr1:85238200-85240200	Enhancers	Esophagus	oesophagus
29	chr1:85238200-85240600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr1:85238200-85241000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr1:85238400-85238600	Enhancers	Brain Anterior Caudate	brain
32	chr1:85238400-85239200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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