Variant report

Variant	rs2025689
Chromosome Location	chr1:85280161-85280162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1077776	1.00[ASN][1000 genomes]
rs1077777	1.00[ASN][1000 genomes]
rs1325274	1.00[ASN][1000 genomes]
rs1417296	1.00[ASN][1000 genomes]
rs1417297	1.00[ASN][1000 genomes]
rs1417299	1.00[ASN][1000 genomes]
rs17115425	1.00[ASN][1000 genomes]
rs17115551	1.00[ASN][1000 genomes]
rs17115615	1.00[ASN][1000 genomes]
rs17116652	1.00[ASN][1000 genomes]
rs17368823	1.00[ASN][1000 genomes]
rs17377380	1.00[ASN][1000 genomes]
rs2389776	1.00[ASN][1000 genomes]
rs2389777	1.00[ASN][1000 genomes]
rs2389785	1.00[ASN][1000 genomes]
rs4484942	0.83[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907094	1.00[ASN][1000 genomes]
rs4907100	1.00[ASN][1000 genomes]
rs55852981	1.00[ASN][1000 genomes]
rs57744031	1.00[ASN][1000 genomes]
rs57925971	1.00[ASN][1000 genomes]
rs58803630	1.00[ASN][1000 genomes]
rs59493945	1.00[ASN][1000 genomes]
rs59536255	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61768760	1.00[ASN][1000 genomes]
rs61768762	0.88[AFR][1000 genomes]
rs61770401	1.00[ASN][1000 genomes]
rs61770406	1.00[ASN][1000 genomes]
rs61770408	1.00[ASN][1000 genomes]
rs61770411	1.00[ASN][1000 genomes]
rs61770414	1.00[ASN][1000 genomes]
rs61770417	1.00[ASN][1000 genomes]
rs61770418	1.00[ASN][1000 genomes]
rs61770419	1.00[ASN][1000 genomes]
rs61770433	1.00[ASN][1000 genomes]
rs61770434	1.00[ASN][1000 genomes]
rs61770435	1.00[ASN][1000 genomes]
rs61770436	1.00[ASN][1000 genomes]
rs61770437	1.00[ASN][1000 genomes]
rs61770439	1.00[ASN][1000 genomes]
rs61770440	1.00[ASN][1000 genomes]
rs61770441	1.00[ASN][1000 genomes]
rs61770442	1.00[ASN][1000 genomes]
rs61770443	1.00[ASN][1000 genomes]
rs61770444	1.00[ASN][1000 genomes]
rs61770446	1.00[ASN][1000 genomes]
rs72718785	1.00[ASN][1000 genomes]
rs72942437	1.00[ASN][1000 genomes]
rs9659298	1.00[ASN][1000 genomes]
rs9660220	1.00[ASN][1000 genomes]
rs9660249	1.00[ASN][1000 genomes]
rs9661368	1.00[ASN][1000 genomes]
rs9661377	1.00[ASN][1000 genomes]
rs9661394	1.00[ASN][1000 genomes]
rs9728153	1.00[ASN][1000 genomes]
rs9728717	0.94[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.87[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2025689	SSX2IP	cis	cerebellum	SCAN
rs2025689	HS2ST1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85264000-85295600	Weak transcription	NHEK	skin
2	chr1:85266400-85287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:85277000-85285400	Weak transcription	Left Ventricle	heart
4	chr1:85277200-85284800	Weak transcription	Fetal Heart	heart
5	chr1:85278200-85287200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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