Variant report
Variant | rs56381984 |
---|---|
Chromosome Location | chr6:56832708-56832709 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1020548 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13193465 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13193800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13198484 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13207800 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13212013 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13214032 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13214255 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13218276 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13220575 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1451707 | 0.83[AMR][1000 genomes] |
rs1451708 | 0.83[AMR][1000 genomes] |
rs17685277 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17685338 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17685380 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2613119 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2817573 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28360535 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs28360536 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28360537 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28360538 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34009699 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs34027274 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs34399458 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs34616943 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34812189 | 0.86[AMR][1000 genomes] |
rs34979183 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35090265 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35336675 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35434542 | 0.83[AMR][1000 genomes] |
rs35605425 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs35735810 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35899012 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35961728 | 0.83[AMR][1000 genomes] |
rs36124814 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs55952713 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6901944 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6904924 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6906623 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6907143 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6927558 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71564869 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71564870 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71564872 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs720884 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7760385 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv491933 | chr6:56177722-57171010 | Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
2 | nsv934026 | chr6:56382056-57184218 | Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
3 | nsv533050 | chr6:56504480-57297586 | Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
4 | nsv1021651 | chr6:56569444-56966319 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
5 | nsv538228 | chr6:56569444-56966319 | Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
6 | esv3430228 | chr6:56830972-57079281 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs56381984 | BEND6 | cis | Esophagus Muscularis | GTEx |
rs56381984 | BEND6 | cis | Heart Left Ventricle | GTEx |
rs56381984 | BEND6 | cis | Muscle Skeletal | GTEx |
rs56381984 | C6orf65 | cis | multi-tissue | Pritchard |
rs56381984 | BEND6 | cis | Thyroid | GTEx |
rs56381984 | BEND6 | cis | Esophagus Mucosa | GTEx |
rs56381984 | BEND6 | cis | Artery Tibial | GTEx |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:56828000-56841600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |