Variant report

Variant	rs56386896
Chromosome Location	chr11:75207307-75207308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75207096..75207957-chr11:75236404..75237668,4	MCF-7	breast:
2	chr11:75203200..75205117-chr11:75206279..75208422,2	MCF-7	breast:
3	chr11:75109850..75112062-chr11:75204799..75207466,2	K562	blood:

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11236444	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11600640	0.99[ASN][1000 genomes]
rs2187568	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276443	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55955041	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56010007	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56207324	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56412430	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56851635	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61897372	0.85[EUR][1000 genomes]
rs61897374	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61897376	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61897380	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61897406	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897410	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897411	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897413	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61897414	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897415	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897416	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61897419	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7125082	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7128197	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7131225	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73494872	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75190400-75207400	Weak transcription	Fetal Stomach	stomach
2	chr11:75199400-75209800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75200000-75219600	Weak transcription	Fetal Brain Female	brain
4	chr11:75202200-75208800	Weak transcription	HSMM	muscle
5	chr11:75202400-75210000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:75203600-75209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:75203800-75208200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:75203800-75208800	Weak transcription	Hela-S3	cervix
9	chr11:75203800-75209200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:75203800-75209200	Weak transcription	HMEC	breast
11	chr11:75203800-75209800	Weak transcription	K562	blood
12	chr11:75203800-75210800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr11:75203800-75210800	Weak transcription	Colonic Mucosa	Colon
14	chr11:75203800-75217800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:75203800-75219200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:75204000-75216600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:75204200-75213400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:75204400-75210600	Weak transcription	Spleen	Spleen
19	chr11:75205600-75209800	Weak transcription	Right Ventricle	heart
20	chr11:75206600-75209800	Enhancers	A549	lung
21	chr11:75206800-75207400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr11:75206800-75207400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:75206800-75207400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr11:75206800-75207400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:75206800-75207600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr11:75206800-75207600	Enhancers	Lung	lung
27	chr11:75206800-75207800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:75206800-75207800	Genic enhancers	Fetal Intestine Small	intestine
29	chr11:75206800-75207800	Enhancers	Fetal Lung	lung
30	chr11:75206800-75207800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:75206800-75208400	Enhancers	Fetal Muscle Trunk	muscle
32	chr11:75206800-75208800	Enhancers	HepG2	liver
33	chr11:75206800-75214200	Enhancers	Placenta	Placenta
34	chr11:75207000-75207400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:75207000-75207400	Enhancers	H9 Cell Line	embryonic stem cell
36	chr11:75207000-75207400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:75207000-75207400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr11:75207000-75207400	Enhancers	Fetal Brain Male	brain
39	chr11:75207000-75207600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:75207000-75207600	Enhancers	Psoas Muscle	Psoas
41	chr11:75207000-75207800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:75207000-75207800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr11:75207000-75207800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:75207000-75207800	Enhancers	Adipose Nuclei	Adipose
45	chr11:75207000-75207800	Enhancers	Fetal Intestine Large	intestine
46	chr11:75207000-75207800	Enhancers	Fetal Muscle Leg	muscle
47	chr11:75207000-75210800	Weak transcription	Gastric	stomach
48	chr11:75207200-75207400	Enhancers	Colon Smooth Muscle	Colon
49	chr11:75207200-75207400	Enhancers	HSMMtube	muscle
50	chr11:75207200-75207600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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