Variant report

Variant	rs61897419
Chromosome Location	chr11:75213174-75213175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75213105..75214694-chr11:75235155..75237426,2	K562	blood:
2	chr11:75209084..75211834-chr11:75212223..75216689,4	K562	blood:
3	chr11:75209740..75211543-chr11:75211641..75214647,3	MCF-7	breast:
4	chr11:75210731..75213962-chr11:75224563..75227666,3	MCF-7	breast:
5	chr11:75213071..75214995-chr11:75295605..75297967,2	K562	blood:
6	chr11:75174189..75176597-chr11:75211783..75214629,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236444	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11600640	0.93[ASN][1000 genomes]
rs2187568	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276443	0.84[EUR][1000 genomes]
rs55955041	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56010007	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56207324	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56386896	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56412430	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56851635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897374	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61897380	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61897406	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897410	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897411	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897413	0.86[EUR][1000 genomes]
rs61897414	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61897415	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61897416	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7125082	0.86[EUR][1000 genomes]
rs7128197	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7131225	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73494872	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75200000-75219600	Weak transcription	Fetal Brain Female	brain
2	chr11:75203800-75217800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:75203800-75219200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:75204000-75216600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:75204200-75213400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:75206800-75214200	Enhancers	Placenta	Placenta
7	chr11:75207400-75216400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:75207600-75216400	Weak transcription	Left Ventricle	heart
9	chr11:75209000-75213400	Enhancers	Adipose Nuclei	Adipose
10	chr11:75209200-75213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:75210200-75216400	Weak transcription	Psoas Muscle	Psoas
12	chr11:75210400-75219400	Weak transcription	Pancreas	Pancrea
13	chr11:75210800-75213600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:75211200-75213800	Enhancers	HepG2	liver
15	chr11:75211200-75216400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:75211200-75219800	Weak transcription	Esophagus	oesophagus
17	chr11:75211400-75214800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr11:75211400-75214800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:75211400-75216600	Weak transcription	K562	blood
20	chr11:75211400-75216800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:75211400-75217800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:75211400-75218200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr11:75211600-75213400	Weak transcription	NHLF	lung
24	chr11:75211800-75216400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:75212000-75216400	Weak transcription	HSMM	muscle
26	chr11:75212000-75217000	Weak transcription	Lung	lung
27	chr11:75212200-75213200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:75212200-75213200	Weak transcription	GM12878-XiMat	blood
29	chr11:75212200-75215000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:75212200-75216000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:75212200-75216600	Weak transcription	Right Atrium	heart
32	chr11:75212200-75218400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:75212400-75213400	Weak transcription	Hela-S3	cervix
34	chr11:75212400-75214800	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:75212600-75213600	Genic enhancers	Fetal Intestine Small	intestine
36	chr11:75212600-75213800	Enhancers	HUVEC	blood vessel
37	chr11:75212600-75216400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:75212600-75219200	Weak transcription	A549	lung
39	chr11:75212600-75227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:75212800-75216400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:75212800-75217400	Weak transcription	Spleen	Spleen
42	chr11:75213000-75213400	Strong transcription	HSMMtube	muscle
43	chr11:75213000-75215800	Weak transcription	Fetal Intestine Large	intestine
44	chr11:75213000-75217200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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