Variant report

Variant	rs61897411
Chromosome Location	chr11:75193214-75193215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:75193158-75193320	K562	blood:	n/a	n/a
2	MAFF	chr11:75193126-75193400	K562	blood:	n/a	n/a
3	MAFK	chr11:75193121-75193416	K562	blood:	n/a	n/a
4	MYC	chr11:75192808-75193343	K562	blood:	n/a	chr11:75192816-75192826 chr11:75193001-75193011 chr11:75193067-75193074
5	MAX	chr11:75192738-75193361	K562	blood:	n/a	chr11:75192816-75192826 chr11:75193001-75193011 chr11:75193067-75193074
6	POLR2A	chr11:75192706-75193637	K562	blood:	n/a	n/a
7	MAZ	chr11:75192675-75193305	K562	blood:	n/a	chr11:75192816-75192826 chr11:75193001-75193011 chr11:75193067-75193074
8	JUND	chr11:75193128-75193510	K562	blood:	n/a	n/a
9	POLR2A	chr11:75193069-75193353	K562	blood:	n/a	n/a
10	MYC	chr11:75192888-75193498	K562	blood:	n/a	chr11:75193001-75193011 chr11:75193067-75193074
11	EP300	chr11:75193115-75193363	K562	blood:	n/a	n/a
12	TEAD4	chr11:75192798-75193484	K562	blood:	n/a	n/a
13	UBTF	chr11:75193122-75193281	K562	blood:	n/a	n/a
14	HMGN3	chr11:75192993-75193257	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:75191759..75194523-chr11:75195624..75199123,4	K562	blood:
2	chr11:75190984..75193901-chr11:75272461..75274225,2	K562	blood:
3	chr11:75189920..75194162-chr11:75235512..75239199,3	K562	blood:
4	chr11:75191661..75193541-chr11:75233272..75235307,2	K562	blood:

Variant related genes	Relation type
GDPD5	TF binding region
ENSG00000149257	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11236444	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11600640	0.96[ASN][1000 genomes]
rs2187568	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276443	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55955041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56010007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56207324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56386896	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56412430	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56851635	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897372	0.85[EUR][1000 genomes]
rs61897374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61897376	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61897380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61897406	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61897410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61897413	0.97[EUR][1000 genomes]
rs61897414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61897419	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7125082	0.97[EUR][1000 genomes]
rs7128197	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73494872	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75187000-75193600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:75187000-75194800	Strong transcription	Fetal Intestine Small	intestine
3	chr11:75187000-75201400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:75187200-75201200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:75187200-75203000	Weak transcription	Primary T cells from cord blood	blood
6	chr11:75187400-75198200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:75187400-75202800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:75187400-75202800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:75187400-75202800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:75187400-75203000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:75187600-75201000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:75187600-75202000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:75187800-75201000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:75188000-75201600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:75188200-75200400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:75188400-75194000	Enhancers	Fetal Brain Male	brain
17	chr11:75188400-75201200	Weak transcription	HSMM	muscle
18	chr11:75188400-75201400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:75188400-75201400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:75188400-75201600	Weak transcription	HSMMtube	muscle
21	chr11:75188600-75201600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:75188800-75193800	Weak transcription	Lung	lung
23	chr11:75190000-75194600	Enhancers	Fetal Muscle Leg	muscle
24	chr11:75190400-75199000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:75190400-75199200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:75190400-75207400	Weak transcription	Fetal Stomach	stomach
27	chr11:75190800-75201600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:75191000-75193800	Weak transcription	Liver	Liver
29	chr11:75191000-75194000	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr11:75191000-75196800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:75191600-75194200	Enhancers	K562	blood
32	chr11:75192000-75194600	Enhancers	Pancreas	Pancrea
33	chr11:75192200-75193600	Weak transcription	HepG2	liver
34	chr11:75192200-75194000	Weak transcription	Left Ventricle	heart
35	chr11:75192200-75194000	Weak transcription	Psoas Muscle	Psoas
36	chr11:75192200-75194600	Enhancers	Fetal Muscle Trunk	muscle
37	chr11:75192200-75194600	Enhancers	Right Ventricle	heart
38	chr11:75192200-75202800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:75192400-75194400	Weak transcription	Right Atrium	heart
40	chr11:75192400-75198200	Weak transcription	Fetal Intestine Large	intestine
41	chr11:75192600-75193800	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr11:75192600-75194000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:75192800-75193800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr11:75192800-75194000	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr11:75192800-75194200	Genic enhancers	Placenta	Placenta
46	chr11:75192800-75195000	Enhancers	Spleen	Spleen
47	chr11:75193000-75193600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:75193000-75193800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:75193000-75203200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:75193200-75193400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links