Variant report

Variant	rs56405915
Chromosome Location	chr5:112185919-112185920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112181480..112186029-chr5:112194933..112197058,4	MCF-7	breast:
2	chr5:112183666..112186404-chr5:112196672..112198293,2	K562	blood:

Variant related genes	Relation type
ENSG00000272869	Chromatin interaction
ENSG00000153037	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17135067	0.87[EUR][1000 genomes]
rs17290064	0.87[EUR][1000 genomes]
rs17310536	0.81[EUR][1000 genomes]
rs17311019	0.81[EUR][1000 genomes]
rs17311096	0.81[EUR][1000 genomes]
rs17359859	0.87[EUR][1000 genomes]
rs17360045	0.87[EUR][1000 genomes]
rs17360289	0.81[EUR][1000 genomes]
rs17369211	0.81[EUR][1000 genomes]
rs17369487	0.81[EUR][1000 genomes]
rs55684649	0.87[EUR][1000 genomes]
rs55771959	0.87[EUR][1000 genomes]
rs55798475	0.81[EUR][1000 genomes]
rs56194248	0.87[EUR][1000 genomes]
rs56218335	0.87[EUR][1000 genomes]
rs56320268	0.87[EUR][1000 genomes]
rs56328836	0.87[EUR][1000 genomes]
rs57043077	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60532731	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73216225	0.83[AMR][1000 genomes]
rs73220038	0.87[EUR][1000 genomes]
rs73220063	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032464	chr5:112076061-112192380	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv537862	chr5:112076061-112192380	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv33290	chr5:112110808-112238295	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv1034239	chr5:112161239-112194693	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv529536	chr5:112174106-112269758	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112175400-112187600	Weak transcription	NHLF	lung
2	chr5:112185800-112186000	Enhancers	Primary B cells from cord blood	blood

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