Variant report

Variant	rs17360045
Chromosome Location	chr5:112133196-112133197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:111495941..111497772-chr5:112131331..112133218,2	K562	blood:
2	chr5:112132025..112134986-chr5:112254619..112257174,2	K562	blood:
3	chr5:112126744..112130086-chr5:112131543..112134649,3	MCF-7	breast:
4	chr5:112132327..112135284-chr5:112197116..112198935,2	K562	blood:

Variant related genes	Relation type
ENSG00000238363	Chromatin interaction
ENSG00000153037	Chromatin interaction
ENSG00000224032	Chromatin interaction
ENSG00000272869	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17135067	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17135193	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17285372	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17285666	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17285827	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17286230	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17290064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17310536	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17311019	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17311096	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17357294	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17359859	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17360289	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369211	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369487	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17370550	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17371015	0.86[EUR][1000 genomes]
rs1833560	0.80[EUR][1000 genomes]
rs55684649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55771959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55798475	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56052440	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56194248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56218335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235416	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56320268	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56321569	0.86[EUR][1000 genomes]
rs56328836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56405915	0.87[EUR][1000 genomes]
rs57043077	1.00[EUR][1000 genomes]
rs60532731	0.87[EUR][1000 genomes]
rs73216225	0.86[EUR][1000 genomes]
rs73220038	1.00[EUR][1000 genomes]
rs73220063	0.80[EUR][1000 genomes]
rs7704566	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7728766	0.86[EUR][1000 genomes]
rs7730441	0.80[EUR][1000 genomes]
rs7730944	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1032464	chr5:112076061-112192380	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv537862	chr5:112076061-112192380	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	esv33290	chr5:112110808-112238295	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112093400-112183800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:112100000-112152200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:112103000-112173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:112104600-112155400	Weak transcription	Psoas Muscle	Psoas
5	chr5:112115600-112134600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr5:112115600-112140000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr5:112115800-112151200	Weak transcription	NHEK	skin
8	chr5:112118200-112136600	Weak transcription	Pancreas	Pancrea
9	chr5:112118200-112151200	Weak transcription	Gastric	stomach
10	chr5:112118200-112155600	Weak transcription	Right Ventricle	heart
11	chr5:112118200-112177000	Weak transcription	Colonic Mucosa	Colon
12	chr5:112123600-112141800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:112124000-112144800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:112125000-112140000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:112125600-112134800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:112126800-112134200	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr5:112126800-112142000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:112127800-112140000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:112128000-112134000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:112128200-112134000	Strong transcription	NHDF-Ad	bronchial
21	chr5:112128400-112133600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:112128600-112133800	Strong transcription	Brain Germinal Matrix	brain
23	chr5:112128800-112133800	Strong transcription	Brain Hippocampus Middle	brain
24	chr5:112129000-112144200	Weak transcription	Esophagus	oesophagus
25	chr5:112129000-112149800	Weak transcription	Left Ventricle	heart
26	chr5:112129000-112151600	Weak transcription	Hela-S3	cervix
27	chr5:112129000-112154600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:112129000-112157400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr5:112129200-112133200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:112129400-112136600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:112129400-112163800	Weak transcription	Small Intestine	intestine
32	chr5:112129600-112163600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr5:112129800-112154800	Weak transcription	NH-A	brain
34	chr5:112130200-112133600	Strong transcription	HSMM	muscle
35	chr5:112130400-112145800	Weak transcription	Placenta	Placenta
36	chr5:112130600-112133200	Weak transcription	Colon Smooth Muscle	Colon
37	chr5:112130600-112133400	Enhancers	Primary B cells from peripheral blood	blood
38	chr5:112130600-112136600	Weak transcription	Brain Substantia Nigra	brain
39	chr5:112130600-112144000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr5:112130600-112150000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:112130600-112150200	Weak transcription	NHLF	lung
42	chr5:112130600-112154800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:112130600-112155400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:112130600-112155600	Weak transcription	Fetal Heart	heart
45	chr5:112130800-112133600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr5:112130800-112135000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr5:112130800-112136600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr5:112130800-112138200	Weak transcription	HMEC	breast
49	chr5:112130800-112139800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr5:112130800-112143800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links