Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:112027068..112028032-chr5:112092853..112093558,4	MCF-7	breast:
2	chr5:112025912..112028598-chr5:112039922..112042129,2	K562	blood:
3	chr5:112018990..112022293-chr5:112024063..112027716,5	K562	blood:
4	chr5:112026956..112028743-chr5:112092684..112094360,6	MCF-7	breast:
5	chr5:112026203..112028934-chr5:112090617..112094558,3	K562	blood:
6	chr5:111887102..111888171-chr5:112026844..112028152,5	MCF-7	breast:
7	chr5:112026916..112029331-chr5:112092996..112093925,9	K562	blood:
8	chr5:112025634..112029272-chr5:112039544..112043579,7	K562	blood:
9	chr5:112026946..112027486-chr5:112183995..112184672,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1372220	0.82[EUR][1000 genomes]
rs17135067	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17285372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17285827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17286230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17290064	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17357294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359859	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17360045	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17360289	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17369487	1.00[CEU][hapmap]
rs55684649	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55771959	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55798475	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56052440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56194248	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56218335	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56235416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56320268	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56328836	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57043077	0.86[EUR][1000 genomes]
rs73216225	1.00[EUR][1000 genomes]
rs73220038	0.86[EUR][1000 genomes]
rs7704566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7728766	0.86[EUR][1000 genomes]
rs7730944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112021800-112030600	Weak transcription	Osteobl	bone
2	chr5:112022600-112030600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:112024200-112027800	Enhancers	K562	blood
4	chr5:112027000-112032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:112027200-112030600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:112027200-112030800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: