Variant report

Variant	rs7730944
Chromosome Location	chr5:112034258-112034259
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1372220	0.82[EUR][1000 genomes]
rs17135067	0.86[EUR][1000 genomes]
rs17285372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17285666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17285827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17286230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17290064	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17357294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359859	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17360045	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17360289	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17369211	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55684649	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55771959	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55798475	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56052440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56194248	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56218335	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56235416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56320268	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56328836	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57043077	0.86[EUR][1000 genomes]
rs73216225	1.00[EUR][1000 genomes]
rs73220038	0.86[EUR][1000 genomes]
rs7704566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7728766	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112033400-112039400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:112033400-112042600	Weak transcription	Ovary	ovary
3	chr5:112034000-112036800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:112034000-112039200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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