Variant report

Variant	rs17290064
Chromosome Location	chr5:112190132-112190133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112187455..112190392-chr5:112195264..112197441,4	MCF-7	breast:
2	chr5:112186187..112188435-chr5:112189268..112191839,2	K562	blood:
3	chr5:112180694..112183270-chr5:112188278..112192219,3	K562	blood:
4	chr5:112180772..112183270-chr5:112188278..112191041,2	K562	blood:

Variant related genes	Relation type
ENSG00000153037	Chromatin interaction
ENSG00000272869	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17135067	1.00[EUR][1000 genomes]
rs17135193	0.80[EUR][1000 genomes]
rs17285666	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17285827	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17286230	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17310536	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17311019	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17311096	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17359859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17360045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17360289	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369211	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369487	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17370550	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17371015	0.86[EUR][1000 genomes]
rs1833560	0.80[EUR][1000 genomes]
rs55684649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55771959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55798475	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55901036	1.00[AMR][1000 genomes]
rs55940904	1.00[AMR][1000 genomes]
rs56052440	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56194248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56218335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235416	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56320268	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56321569	0.86[EUR][1000 genomes]
rs56328836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56405915	0.87[EUR][1000 genomes]
rs57043077	1.00[EUR][1000 genomes]
rs60532731	0.87[EUR][1000 genomes]
rs73216225	0.86[EUR][1000 genomes]
rs73220038	1.00[EUR][1000 genomes]
rs73220063	0.80[EUR][1000 genomes]
rs7704566	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7728766	0.86[EUR][1000 genomes]
rs7730441	0.80[EUR][1000 genomes]
rs7730944	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032464	chr5:112076061-112192380	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv537862	chr5:112076061-112192380	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv33290	chr5:112110808-112238295	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv1034239	chr5:112161239-112194693	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv529536	chr5:112174106-112269758	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112189400-112196200	Weak transcription	Spleen	Spleen

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