Variant report

Variant	rs56412558
Chromosome Location	chr16:75903726-75903727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75902948..75904497-chr16:75904944..75907601,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16943554	1.00[ASN][1000 genomes]
rs16943556	1.00[ASN][1000 genomes]
rs16943557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697421	1.00[ASN][1000 genomes]
rs17697457	1.00[ASN][1000 genomes]
rs17765032	1.00[ASN][1000 genomes]
rs17765038	1.00[ASN][1000 genomes]
rs17765044	1.00[ASN][1000 genomes]
rs17765068	1.00[ASN][1000 genomes]
rs4517822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56150607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57332187	1.00[ASN][1000 genomes]
rs60226211	0.90[ASN][1000 genomes]
rs7187408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73618804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024827	1.00[ASN][1000 genomes]
rs74024828	1.00[ASN][1000 genomes]
rs74024829	1.00[ASN][1000 genomes]
rs8046817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv3416058	chr16:75863360-76086224	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1057858	chr16:75895639-76054551	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv906931	chr16:75898641-76005912	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv906932	chr16:75898641-76069129	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75901600-75903800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:75901600-75903800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr16:75901800-75903800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links