Variant report

Variant	rs74024829
Chromosome Location	chr16:75835445-75835446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75835108..75835786-chr16:76687075..76687822,2	MCF-7	breast:
2	chr16:75827564..75829518-chr16:75833625..75835572,2	K562	blood:
3	chr16:75835360..75835894-chr16:77203310..77204256,2	K562	blood:
4	chr16:75834944..75835823-chr16:76687371..76688062,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16943552	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943554	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16943556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16943557	1.00[ASN][1000 genomes]
rs17697421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697457	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517822	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56127813	1.00[ASN][1000 genomes]
rs56150607	1.00[ASN][1000 genomes]
rs56412558	1.00[ASN][1000 genomes]
rs57332187	1.00[ASN][1000 genomes]
rs60226211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7187408	1.00[ASN][1000 genomes]
rs7187899	1.00[ASN][1000 genomes]
rs73616925	1.00[ASN][1000 genomes]
rs73616928	1.00[ASN][1000 genomes]
rs73616989	1.00[ASN][1000 genomes]
rs73616991	1.00[ASN][1000 genomes]
rs73616999	1.00[ASN][1000 genomes]
rs73618804	1.00[ASN][1000 genomes]
rs74024827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024828	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024840	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046817	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv906930	chr16:75728261-75872464	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv1066506	chr16:75798379-75853388	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75835000-75835800	Enhancers	Brain Hippocampus Middle	brain
2	chr16:75835400-75835800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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