Variant report

Variant	rs7187899
Chromosome Location	chr16:75870812-75870813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11556641	1.00[JPT][hapmap]
rs16941409	1.00[JPT][hapmap]
rs16941516	1.00[JPT][hapmap]
rs16942032	1.00[JPT][hapmap]
rs16943552	0.85[AMR][1000 genomes]
rs16943554	1.00[ASN][1000 genomes]
rs16943556	1.00[ASN][1000 genomes]
rs16943557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697421	1.00[ASN][1000 genomes]
rs17697457	1.00[ASN][1000 genomes]
rs17765032	1.00[ASN][1000 genomes]
rs17765038	1.00[ASN][1000 genomes]
rs17765044	1.00[ASN][1000 genomes]
rs17765068	1.00[ASN][1000 genomes]
rs4262972	1.00[JPT][hapmap]
rs4517822	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56150607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56412558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57332187	1.00[ASN][1000 genomes]
rs60226211	0.90[ASN][1000 genomes]
rs7187408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73616925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73616999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73618804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024827	1.00[ASN][1000 genomes]
rs74024828	1.00[ASN][1000 genomes]
rs74024829	1.00[ASN][1000 genomes]
rs8046817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs920037	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv906930	chr16:75728261-75872464	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv3416058	chr16:75863360-76086224	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75869800-75871000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr16:75869800-75871600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:75870400-75871600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:75870800-75871000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr16:75870800-75871800	Weak transcription	Brain Germinal Matrix	brain

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