Variant report

Variant	rs564572253
Chromosome Location	chr6:15027613-15027614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1015671	chr6:15027130-15063152	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1026368	chr6:15027130-15063790	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15018400-15029200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:15022200-15031800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15022400-15032600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:15024000-15037000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:15026800-15028000	Enhancers	HepG2	liver
6	chr6:15027000-15027800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:15027000-15027800	Enhancers	Liver	Liver
8	chr6:15027000-15027800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:15027200-15027800	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:15027200-15029000	Weak transcription	Fetal Thymus	thymus
11	chr6:15027400-15029200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:15027400-15036800	Weak transcription	Right Atrium	heart
13	chr6:15027400-15037000	Weak transcription	Fetal Kidney	kidney
14	chr6:15027600-15027800	Active TSS	A549	lung
15	chr6:15027600-15028000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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