Variant report

Variant	rs565103822
Chromosome Location	chr19:56851237-56851238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr19:56851135-56851431	GM12878	blood:	n/a	n/a
2	TBL1XR1	chr19:56851221-56851257	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:56851220-56851270	A549	lung:	n/a
2	chr19:56851220-56851270	SKMC	muscle:	n/a
3	chr19:56851220-56851270	AG04449	skin:	fetal
4	chr19:56851220-56851270	SK-N-SH_RA	brain:	n/a
5	chr19:56851220-56851270	AG10803	skin:	n/a
6	chr19:56851220-56851270	HCT-116	colon:	n/a
7	chr19:56851220-56851270	RPTEC	kidney:	n/a
8	chr19:56851220-56851270	SK-N-MC	brain:	n/a
9	chr19:56851220-56851270	U87	brain:	n/a
10	chr19:56851220-56851270	GM12892	blood:	n/a
11	chr19:56851220-56851270	Hepatocyte	liver:	n/a
12	chr19:56851220-56851270	HRPEpiC	eye:	n/a
13	chr19:56851220-56851270	HL-60	blood:	n/a
14	chr19:56851220-56851270	AoSMC	blood vessel:	n/a
15	chr19:56851220-56851270	HepG2	liver:	n/a
16	chr19:56851220-56851270	NHDF-neo	bronchial:	n/a
17	chr19:56851220-56851270	HCF	heart:	n/a
18	chr19:56851220-56851270	BJ	skin:	n/a
19	chr19:56851220-56851270	HNPCEpiC	eye:	n/a
20	chr19:56851220-56851270	AG04450	lung:	fetal
21	chr19:56851220-56851270	HIPEpiC	eye:	n/a
22	chr19:56851220-56851270	SK-N-SH	brain:	n/a
23	chr19:56851220-56851270	NH-A	brain:	n/a
24	chr19:56851220-56851270	GM19239	blood:	n/a
25	chr19:56851220-56851270	HRE	kidney:	n/a
26	chr19:56851220-56851270	IMR90	lung:	fetal
27	chr19:56851220-56851270	NHBE	bronchial:	n/a
28	chr19:56851220-56851270	PANC-1	pancreas:	n/a
29	chr19:56851220-56851270	Hela-S3	cervix:	n/a
30	chr19:56851220-56851270	GM12891	blood:	n/a
31	chr19:56851220-56851270	MCF-7	breast:	n/a
32	chr19:56851220-56851270	ProgFib	skin:	n/a
33	chr19:56851220-56851270	CMK	blood:	n/a
34	chr19:56851220-56851270	HCPEpiC	choroid plexus:	n/a
35	chr19:56851220-56851270	ovcar-3	ovarian:	n/a
36	chr19:56851220-56851270	ECC-1	luminal epithelium:	n/a
37	chr19:56851220-56851270	MCF10A-Er-Src	breast:	n/a
38	chr19:56851220-56851270	HMEC	breast:	n/a
39	chr19:56851220-56851270	NB4	blood:	n/a
40	chr19:56851220-56851270	NT2-D1	testis:	n/a
41	chr19:56851220-56851270	AG09309	skin:	n/a
42	chr19:56851220-56851270	GM12878	blood:	n/a
43	chr19:56851220-56851270	HUVEC	blood vessel:	n/a
44	chr19:56851220-56851270	PFSK-1	brain:	n/a
45	chr19:56851220-56851270	Caco-2	colon:	n/a
46	chr19:56851220-56851270	GM06990	blood:	n/a
47	chr19:56851220-56851270	K562	blood:	n/a
48	chr19:56851220-56851270	T-47D	breast:	n/a
49	chr19:56851220-56851270	BE2_C	brain:	n/a
50	chr19:56851220-56851270	PrEC	prostate:	n/a

No data

Variant related genes	Relation type
ENSG00000267145	TF binding region
ENSG00000267145	CpG island

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv526325	chr19:56741186-56852035	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
6	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
8	nsv1067261	chr19:56820571-56854916	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	esv3491798	chr19:56849965-56852113	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	esv3491799	chr19:56849965-56852113	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	esv17420	chr19:56849972-56851425	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	esv20742	chr19:56850458-56851297	Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	nsv820866	chr19:56850458-56851425	ZNF genes & repeats Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	esv1837760	chr19:56850795-56877187	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv580357	chr19:56850949-56869794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv580358	chr19:56851001-56869794	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56850400-56851600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr19:56851200-56852000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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