Variant report

Variant	rs565176367
Chromosome Location	chr17:15608899-15608900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
7	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv962262	chr17:15601321-15609621	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
11	nsv515999	chr17:15608194-15611495	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	nsv827899	chr17:15608221-15609388	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15603200-15609200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr17:15603400-15609000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr17:15603400-15609000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr17:15603400-15609000	Weak transcription	Placenta	Placenta
5	chr17:15603400-15609200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:15603400-15609200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr17:15603400-15609200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr17:15603400-15609200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr17:15603400-15609200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:15603400-15609200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr17:15603400-15609200	Weak transcription	Fetal Kidney	kidney
12	chr17:15603400-15609200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr17:15603400-15609400	Weak transcription	Brain Anterior Caudate	brain
14	chr17:15603400-15609400	Weak transcription	Brain Substantia Nigra	brain
15	chr17:15603400-15609400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr17:15603400-15609600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr17:15603400-15609600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:15603400-15609600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr17:15603400-15609600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr17:15603400-15609600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr17:15603400-15609600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr17:15603400-15609600	Weak transcription	Thymus	Thymus
23	chr17:15603400-15609600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr17:15603400-15609800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr17:15603400-15609800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr17:15603400-15610200	Weak transcription	Aorta	Aorta
27	chr17:15603400-15610200	Weak transcription	Left Ventricle	heart
28	chr17:15603400-15610200	Weak transcription	Lung	lung
29	chr17:15603400-15610400	Weak transcription	Gastric	stomach
30	chr17:15603400-15610800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr17:15603400-15610800	Weak transcription	Adipose Nuclei	Adipose
32	chr17:15603400-15610800	Weak transcription	Psoas Muscle	Psoas
33	chr17:15603400-15610800	Weak transcription	NHLF	lung
34	chr17:15603400-15611000	Weak transcription	Brain Angular Gyrus	brain
35	chr17:15603400-15611000	Weak transcription	Right Ventricle	heart
36	chr17:15603400-15611600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr17:15603400-15612000	Weak transcription	Colon Smooth Muscle	Colon
38	chr17:15603400-15616400	Weak transcription	Pancreas	Pancrea
39	chr17:15603600-15609200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr17:15603600-15611000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr17:15603600-15619200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr17:15603800-15609200	Weak transcription	Brain Hippocampus Middle	brain
43	chr17:15603800-15609400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr17:15604000-15609000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr17:15604000-15609400	Weak transcription	HepG2	liver
46	chr17:15604000-15609400	Weak transcription	HMEC	breast
47	chr17:15604000-15609600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr17:15604000-15609800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr17:15604000-15610800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:15604000-15611800	Weak transcription	K562	blood

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