Variant report

Variant	rs566176909
Chromosome Location	chr15:56299444-56299445
allele	-/GCTGGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:56299206-56299648	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr15:56299304-56299519	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr15:56299343-56299555	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56284455..56287261-chr15:56299264..56302045,2	MCF-7	breast:

Variant related genes	Relation type
CNOT6LP1	TF binding region
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457159	chr15:56255774-56321854	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv569543	chr15:56255774-56321854	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv457160	chr15:56273446-56320235	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
6	nsv569544	chr15:56273446-56320235	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
7	nsv457161	chr15:56274443-56324451	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
8	nsv569545	chr15:56274443-56324451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
9	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
10	nsv827339	chr15:56298487-56300438	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv827340	chr15:56298487-56302591	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56298400-56299600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:56298400-56300000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:56298600-56299800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:56298600-56299800	Active TSS	Muscle Satellite Cultured Cells	--
5	chr15:56298600-56299800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr15:56298600-56300000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:56298800-56299800	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr15:56298800-56299800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:56298800-56299800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:56298800-56299800	Active TSS	Duodenum Mucosa	Duodenum
11	chr15:56298800-56299800	Active TSS	Placenta	Placenta
12	chr15:56298800-56299800	Active TSS	Ovary	ovary
13	chr15:56298800-56299800	Active TSS	HSMM	muscle
14	chr15:56298800-56299800	Active TSS	HSMMtube	muscle
15	chr15:56298800-56299800	Active TSS	HUVEC	blood vessel
16	chr15:56298800-56299800	Active TSS	Osteobl	bone
17	chr15:56298800-56300000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr15:56298800-56300000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:56298800-56300000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:56298800-56300000	Active TSS	Stomach Smooth Muscle	stomach
21	chr15:56298800-56300000	Active TSS	NHDF-Ad	bronchial
22	chr15:56298800-56300000	Active TSS	NHLF	lung
23	chr15:56299000-56299600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr15:56299000-56299600	Enhancers	K562	blood
25	chr15:56299000-56299800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr15:56299000-56299800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:56299000-56299800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:56299000-56299800	Active TSS	Adipose Nuclei	Adipose
29	chr15:56299000-56299800	Active TSS	Brain Anterior Caudate	brain
30	chr15:56299000-56299800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:56299000-56299800	Active TSS	Fetal Brain Female	brain
32	chr15:56299000-56299800	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr15:56299000-56299800	Active TSS	Left Ventricle	heart
34	chr15:56299000-56299800	Active TSS	Right Atrium	heart
35	chr15:56299000-56300000	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr15:56299000-56300000	Active TSS	H1 Cell Line	embryonic stem cell
37	chr15:56299000-56300000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:56299000-56300000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:56299000-56300000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
40	chr15:56299000-56300000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr15:56299000-56300000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
42	chr15:56299000-56300000	Active TSS	Brain Cingulate Gyrus	brain
43	chr15:56299200-56299600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:56299200-56299600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:56299200-56299600	Active TSS	Lung	lung
46	chr15:56299200-56299600	Active TSS	Psoas Muscle	Psoas
47	chr15:56299200-56299600	Active TSS	A549	lung
48	chr15:56299200-56299800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:56299200-56299800	Active TSS	H9 Cell Line	embryonic stem cell
50	chr15:56299200-56299800	Active TSS	HUES48 Cell Line	embryonic stem cell

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