Variant report

Variant	rs56661227
Chromosome Location	chr7:69078791-69078792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11971626	1.00[EUR][1000 genomes]
rs11979460	1.00[EUR][1000 genomes]
rs11982691	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59483768	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60431977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60659484	1.00[EUR][1000 genomes]
rs61510749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61745341	1.00[EUR][1000 genomes]
rs6959561	1.00[EUR][1000 genomes]
rs6976556	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69066600-69079600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:69066800-69084600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:69075200-69079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:69075400-69084600	Weak transcription	Fetal Kidney	kidney
5	chr7:69075600-69079000	Weak transcription	Brain Anterior Caudate	brain
6	chr7:69075800-69079600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:69076200-69086800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:69076400-69080800	Weak transcription	Ovary	ovary
9	chr7:69076400-69082200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:69076400-69084600	Weak transcription	Fetal Lung	lung
11	chr7:69076400-69087600	Weak transcription	Adipose Nuclei	Adipose
12	chr7:69076400-69095400	Weak transcription	Fetal Stomach	stomach
13	chr7:69077400-69079200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:69077600-69079200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr7:69077600-69079800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:69077600-69079800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:69077600-69079800	Enhancers	Brain Germinal Matrix	brain
18	chr7:69077600-69081400	Enhancers	Brain Cingulate Gyrus	brain
19	chr7:69077800-69079200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr7:69077800-69079200	Enhancers	Fetal Heart	heart
21	chr7:69077800-69079600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:69077800-69080200	Enhancers	Brain Hippocampus Middle	brain
23	chr7:69078000-69078800	Enhancers	Brain Substantia Nigra	brain
24	chr7:69078000-69079000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
25	chr7:69078000-69079800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr7:69078000-69080600	Weak transcription	Brain Angular Gyrus	brain
27	chr7:69078200-69084000	Weak transcription	Fetal Brain Male	brain
28	chr7:69078400-69078800	Weak transcription	Fetal Brain Female	brain
29	chr7:69078400-69079200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr7:69078400-69079200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:69078600-69079000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
32	chr7:69078600-69079000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:69078600-69079200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
34	chr7:69078600-69079200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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