Variant report

Variant	rs6976556
Chromosome Location	chr7:69155477-69155478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11979460	0.82[AFR][1000 genomes]
rs11982691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56661227	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57210197	0.82[AFR][1000 genomes]
rs59483768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60431977	1.00[AMR][1000 genomes]
rs60651146	0.82[AFR][1000 genomes]
rs60659484	0.83[AFR][1000 genomes]
rs61510749	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959561	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1034380	chr7:69137914-69171449	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69143800-69156600	Weak transcription	Left Ventricle	heart
2	chr7:69148400-69166200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:69150200-69156200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:69150200-69161400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:69150400-69156000	Weak transcription	Fetal Thymus	thymus
6	chr7:69150400-69160800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:69150400-69161000	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:69150600-69156000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:69150600-69156000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:69150600-69162600	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:69150800-69156400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:69151000-69156400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:69151000-69158200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:69151000-69161000	Weak transcription	Right Atrium	heart
15	chr7:69151200-69161200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:69151400-69161000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:69153000-69156000	Weak transcription	Fetal Intestine Small	intestine
18	chr7:69153200-69158400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:69153400-69156000	Weak transcription	Ovary	ovary
20	chr7:69153400-69161200	Weak transcription	Brain Germinal Matrix	brain
21	chr7:69153400-69161200	Weak transcription	Fetal Brain Female	brain
22	chr7:69153600-69156800	Weak transcription	Fetal Lung	lung
23	chr7:69153600-69167400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:69154800-69157000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr7:69155200-69156200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:69155200-69157000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:69155200-69157200	Strong transcription	Fetal Stomach	stomach
28	chr7:69155400-69155600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:69155400-69155600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:69155400-69155600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr7:69155400-69155600	Enhancers	Lung	lung
32	chr7:69155400-69156000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:69155400-69156200	Genic enhancers	Dnd41	blood
34	chr7:69155400-69156600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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