Variant report

Variant	rs6959561
Chromosome Location	chr7:69310676-69310677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69305548..69307100-chr7:69308617..69310960,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11971626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975908	1.00[EUR][1000 genomes]
rs11979460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11982691	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56661227	1.00[EUR][1000 genomes]
rs59483768	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60431977	1.00[EUR][1000 genomes]
rs60659484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61510749	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61745341	1.00[EUR][1000 genomes]
rs6976556	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv532781	chr7:69297250-69330796	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538919	chr7:69298265-69311376	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69293600-69310800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:69304000-69311600	Enhancers	Primary B cells from peripheral blood	blood
3	chr7:69305200-69312800	Weak transcription	Dnd41	blood
4	chr7:69306400-69310800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:69306400-69312800	Weak transcription	Fetal Lung	lung
6	chr7:69306600-69310800	Weak transcription	Fetal Brain Male	brain
7	chr7:69306600-69312600	Weak transcription	Ovary	ovary
8	chr7:69306800-69310800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:69307600-69311400	Enhancers	Primary B cells from cord blood	blood
10	chr7:69309000-69311400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:69309800-69312400	Weak transcription	Fetal Brain Female	brain
12	chr7:69310200-69311000	Enhancers	Brain Germinal Matrix	brain
13	chr7:69310200-69311200	Flanking Active TSS	GM12878-XiMat	blood
14	chr7:69310400-69311000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:69310400-69311000	Enhancers	Brain Hippocampus Middle	brain
16	chr7:69310400-69311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr7:69310400-69311600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:69310400-69311600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:69310400-69311800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:69310600-69310800	Enhancers	Psoas Muscle	Psoas
21	chr7:69310600-69311000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:69310600-69311000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:69310600-69311000	Enhancers	Brain Anterior Caudate	brain

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