Variant report

Variant	rs566613901
Chromosome Location	chr6:28046812-28046813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ZNF165	TF binding region
ENSG00000196331	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000219891	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000197279	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv33436	chr6:28044346-28049043	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv823466	chr6:28046620-28048635	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv823467	chr6:28046710-28048540	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28043200-28047800	Weak transcription	Spleen	Spleen
2	chr6:28045200-28047600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:28045600-28047800	Weak transcription	Right Atrium	heart
4	chr6:28045800-28047800	Weak transcription	Fetal Brain Male	brain
5	chr6:28046000-28047800	Weak transcription	Fetal Heart	heart
6	chr6:28046200-28047000	Enhancers	GM12878-XiMat	blood
7	chr6:28046200-28047400	Enhancers	K562	blood
8	chr6:28046400-28047600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:28046600-28047400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:28046800-28047000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:28046800-28047000	Enhancers	Lung	lung
12	chr6:28046800-28047600	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:28046800-28047600	Enhancers	Placenta	Placenta
14	chr6:28046800-28047800	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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