Variant report
| Variant | rs56689123 |
|---|---|
| Chromosome Location | chr21:15952178-15952179 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SAMSN1-AS1 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs57061183 | 1.00[ASN][1000 genomes] |
| rs57285749 | 1.00[ASN][1000 genomes] |
| rs57460587 | 1.00[ASN][1000 genomes] |
| rs58907859 | 1.00[ASN][1000 genomes] |
| rs58995566 | 1.00[ASN][1000 genomes] |
| rs59196713 | 1.00[ASN][1000 genomes] |
| rs60267968 | 1.00[ASN][1000 genomes] |
| rs61244737 | 1.00[ASN][1000 genomes] |
| rs7275458 | 1.00[ASN][1000 genomes] |
| rs7278813 | 1.00[ASN][1000 genomes] |
| rs73344137 | 1.00[ASN][1000 genomes] |
| rs73344139 | 1.00[ASN][1000 genomes] |
| rs8127259 | 1.00[ASN][1000 genomes] |
| rs8127264 | 1.00[ASN][1000 genomes] |
| rs8131133 | 1.00[ASN][1000 genomes] |
| rs8131837 | 1.00[ASN][1000 genomes] |
| rs8133615 | 1.00[ASN][1000 genomes] |
| rs9977981 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1059591 | chr21:15835325-15969195 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1057934 | chr21:15863224-15969195 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv834045 | chr21:15900678-16112850 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv834046 | chr21:15903792-16077369 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv470879 | chr21:15946828-15964278 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:15952000-15953400 | Enhancers | K562 | blood |
