Variant report

Variant	rs9977981
Chromosome Location	chr21:15951156-15951157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56689123	1.00[ASN][1000 genomes]
rs57061183	1.00[ASN][1000 genomes]
rs57285749	1.00[ASN][1000 genomes]
rs57460587	1.00[ASN][1000 genomes]
rs58907859	1.00[ASN][1000 genomes]
rs58995566	1.00[ASN][1000 genomes]
rs59196713	1.00[ASN][1000 genomes]
rs60267968	1.00[ASN][1000 genomes]
rs61244737	1.00[ASN][1000 genomes]
rs7275458	1.00[ASN][1000 genomes]
rs7278813	1.00[ASN][1000 genomes]
rs73344137	1.00[ASN][1000 genomes]
rs73344139	1.00[ASN][1000 genomes]
rs8127259	1.00[ASN][1000 genomes]
rs8127264	1.00[ASN][1000 genomes]
rs8131133	1.00[ASN][1000 genomes]
rs8131837	1.00[ASN][1000 genomes]
rs8133615	1.00[ASN][1000 genomes]
rs9978880	0.87[AFR][1000 genomes]
rs9979685	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470879	chr21:15946828-15964278	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15949000-15952000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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