Variant report

Variant	rs58995566
Chromosome Location	chr21:15880748-15880749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15878918..15881751-chr21:15882365..15886915,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs56084607	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350212	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56689123	1.00[ASN][1000 genomes]
rs57061183	1.00[ASN][1000 genomes]
rs57285749	1.00[ASN][1000 genomes]
rs57460587	1.00[ASN][1000 genomes]
rs57526241	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58806655	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58907859	1.00[ASN][1000 genomes]
rs59082350	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59196713	1.00[ASN][1000 genomes]
rs59323940	0.82[AMR][1000 genomes]
rs59551328	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60267968	1.00[ASN][1000 genomes]
rs60852348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61244737	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7275458	1.00[ASN][1000 genomes]
rs7278813	1.00[ASN][1000 genomes]
rs73344137	1.00[ASN][1000 genomes]
rs73344139	1.00[ASN][1000 genomes]
rs73344160	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8127259	1.00[ASN][1000 genomes]
rs8127264	1.00[ASN][1000 genomes]
rs8131133	1.00[ASN][1000 genomes]
rs8131837	1.00[ASN][1000 genomes]
rs8133615	1.00[ASN][1000 genomes]
rs9977981	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv913405	chr21:15875108-15899085	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv913406	chr21:15875108-15905580	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15853200-15885800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
3	chr21:15857200-15882600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr21:15861600-15881000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr21:15862600-15889400	Strong transcription	Dnd41	blood
6	chr21:15864800-15881600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr21:15867000-15890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr21:15873400-15881200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr21:15873400-15891000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr21:15875800-15882000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr21:15875800-15894000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr21:15876400-15881000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr21:15876400-15881600	Weak transcription	Thymus	Thymus
14	chr21:15876400-15881800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr21:15876400-15882600	Weak transcription	Spleen	Spleen
16	chr21:15876600-15881400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr21:15876600-15881600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr21:15876800-15881600	Weak transcription	Fetal Thymus	thymus
19	chr21:15876800-15882400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr21:15876800-15882600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr21:15877200-15885600	Weak transcription	Gastric	stomach
22	chr21:15878000-15890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr21:15878200-15881400	Strong transcription	Primary hematopoietic stem cells	blood
24	chr21:15878600-15885000	Strong transcription	Primary T cells from cord blood	blood
25	chr21:15879000-15881600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr21:15879200-15892600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr21:15879400-15882800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr21:15879400-15889400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr21:15879400-15892800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr21:15879600-15881000	Weak transcription	GM12878-XiMat	blood
31	chr21:15879600-15884400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr21:15879600-15888800	Strong transcription	Primary B cells from cord blood	blood
33	chr21:15879800-15892800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr21:15880000-15880800	Weak transcription	K562	blood
35	chr21:15880000-15881600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr21:15880000-15881800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links