Variant report

Variant	rs56690653
Chromosome Location	chr8:54155148-54155149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPBWR1-1	chr8:54155088-54155243	ENSG00000254687.1

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10504151	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1051660	0.93[EUR][1000 genomes]
rs12056411	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12056414	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16918928	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16918934	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16918938	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2303432	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2303433	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57161200	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58452354	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61469188	0.84[AMR][1000 genomes]
rs73589353	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589371	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589373	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589374	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589376	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589378	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589380	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589382	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589387	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589389	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589390	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73589391	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73589393	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73589394	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73589396	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73589397	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73589399	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7813478	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7826599	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv438054	chr8:54152982-54161358	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv3445259	chr8:54155026-54155302	Inactive region	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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