Variant report
| Variant | rs61469188 |
|---|---|
| Chromosome Location | chr8:54155168-54155169 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NPBWR1-1 | chr8:54155088-54155243 | ENSG00000254687.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10504151 | 0.82[ASN][1000 genomes] |
| rs12056411 | 0.81[ASN][1000 genomes] |
| rs12056414 | 0.81[ASN][1000 genomes] |
| rs16918928 | 0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16918934 | 0.82[ASN][1000 genomes] |
| rs16918938 | 0.81[ASN][1000 genomes] |
| rs2303432 | 0.82[ASN][1000 genomes] |
| rs2303433 | 0.82[ASN][1000 genomes] |
| rs56690653 | 0.84[AMR][1000 genomes] |
| rs57161200 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs58452354 | 0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73589353 | 0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73589371 | 0.82[ASN][1000 genomes] |
| rs73589373 | 0.82[ASN][1000 genomes] |
| rs73589374 | 0.82[ASN][1000 genomes] |
| rs73589376 | 0.82[ASN][1000 genomes] |
| rs73589378 | 0.82[ASN][1000 genomes] |
| rs73589380 | 0.82[ASN][1000 genomes] |
| rs73589382 | 0.82[ASN][1000 genomes] |
| rs73589387 | 0.82[ASN][1000 genomes] |
| rs73589389 | 0.82[ASN][1000 genomes] |
| rs73589390 | 0.82[ASN][1000 genomes] |
| rs73589391 | 0.81[ASN][1000 genomes] |
| rs73589393 | 0.81[ASN][1000 genomes] |
| rs73589394 | 0.81[ASN][1000 genomes] |
| rs73589396 | 0.81[ASN][1000 genomes] |
| rs73589397 | 0.81[ASN][1000 genomes] |
| rs73589399 | 0.81[ASN][1000 genomes] |
| rs7813478 | 0.82[ASN][1000 genomes] |
| rs7826599 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016224 | chr8:53719941-54367534 | Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv530534 | chr8:53787984-54367353 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv3377304 | chr8:53873441-54380875 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv438054 | chr8:54152982-54161358 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | esv3445259 | chr8:54155026-54155302 | Inactive region | lncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
