Variant report

Variant	rs57161200
Chromosome Location	chr8:54154777-54154778
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:54154773-54154852	Gliobla	brain:	n/a	n/a
2	CTCF	chr8:54154735-54154828	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
OPRK1	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10504151	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1051660	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12056411	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12056414	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16918928	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918934	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918938	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303432	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303433	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35970029	0.96[ASN][1000 genomes]
rs56690653	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58452354	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61469188	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73589353	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589371	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589373	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589374	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589376	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589378	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589380	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589382	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589387	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589389	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589390	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589391	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73589393	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73589394	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73589396	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73589397	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73589399	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7813478	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826599	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984136	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv438054	chr8:54152982-54161358	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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