Variant report

Variant	rs56698675
Chromosome Location	chr7:120228315-120228316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56804074	1.00[AMR][1000 genomes]
rs73721410	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721424	1.00[AMR][1000 genomes]
rs73721428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721452	1.00[AMR][1000 genomes]
rs73721453	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120224600-120228400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:120224600-120228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120225000-120230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:120225200-120228600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:120225200-120229800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:120225800-120228600	Weak transcription	HUVEC	blood vessel
8	chr7:120227000-120229200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:120227400-120228600	Weak transcription	Fetal Kidney	kidney
10	chr7:120227600-120228600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:120227600-120228600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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