Variant report

Variant	rs73721418
Chromosome Location	chr7:120189582-120189583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56698675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56804074	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721424	1.00[AMR][1000 genomes]
rs73721428	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721452	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721456	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120180200-120190200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120188000-120189800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:120188800-120190400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:120188800-120191600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:120189000-120190400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:120189200-120190400	Weak transcription	GM12878-XiMat	blood
7	chr7:120189200-120192200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:120189200-120193000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:120189400-120192200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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