Variant report

Variant	rs73721410
Chromosome Location	chr7:120163140-120163141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56698675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56804074	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721424	1.00[AMR][1000 genomes]
rs73721428	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721452	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721456	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120160600-120164600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120162000-120163200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120162000-120163200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr7:120162000-120163200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr7:120162000-120163200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:120162000-120163200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:120162400-120165600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:120162400-120180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:120162600-120165600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:120162800-120163200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr7:120162800-120163200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr7:120162800-120163800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:120163000-120163200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:120163000-120163200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr7:120163000-120165400	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links