Variant report

Variant	rs56718542
Chromosome Location	chr14:39329316-39329317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2064958	0.82[AFR][1000 genomes]
rs55821302	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57949090	0.85[AFR][1000 genomes]
rs7143224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157980	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158456	0.89[AFR][1000 genomes]
rs7158641	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159032	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277190	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277194	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277197	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281317	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281319	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281360	0.85[AFR][1000 genomes]
rs73281373	0.85[AFR][1000 genomes]
rs73281380	0.85[AFR][1000 genomes]
rs8006698	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39329200-39332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links