Variant report

Variant	rs73277193
Chromosome Location	chr14:39321526-39321527
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1547051	0.87[AFR][1000 genomes]
rs1547052	0.87[AFR][1000 genomes]
rs55821302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56718542	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158456	1.00[AFR][1000 genomes]
rs7158641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277188	0.86[AFR][1000 genomes]
rs73277190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281343	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39318200-39323200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr14:39321200-39321600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:39321200-39321800	Enhancers	Brain Hippocampus Middle	brain
4	chr14:39321200-39321800	Enhancers	Brain Substantia Nigra	brain
5	chr14:39321400-39321800	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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