Variant report

Variant	rs56728386
Chromosome Location	chr11:66750846-66750847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66612074..66613943-chr11:66749013..66751834,2	MCF-7	breast:
2	chr11:66747376..66751420-chr11:66789449..66793190,5	MCF-7	breast:
3	chr11:66749751..66751593-chr11:66758216..66761175,2	MCF-7	breast:
4	chr11:66748233..66751062-chr11:66754881..66756647,2	MCF-7	breast:
5	chr11:66749599..66751251-chr11:66751606..66753740,2	MCF-7	breast:
6	chr11:66724528..66726161-chr11:66749872..66751575,2	MCF-7	breast:
7	chr11:66749409..66752439-chr11:66788790..66793269,7	MCF-7	breast:
8	chr11:66749799..66751490-chr11:66795208..66797485,3	MCF-7	breast:
9	chr11:66749306..66751873-chr11:66755203..66757268,2	K562	blood:
10	chr11:66748487..66751221-chr11:66752462..66754679,2	K562	blood:
11	chr11:66749347..66751638-chr11:66758064..66759874,2	K562	blood:
12	chr11:66733786..66735910-chr11:66748456..66751167,2	MCF-7	breast:
13	chr11:66748815..66755953-chr11:66843606..66849844,15	MCF-7	breast:
14	chr11:66745194..66747817-chr11:66749814..66753164,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173227	Chromatin interaction
ENSG00000173599	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11538048	1.00[AMR][1000 genomes]
rs55962689	1.00[AMR][1000 genomes]
rs56049904	1.00[AMR][1000 genomes]
rs56194916	1.00[AMR][1000 genomes]
rs56705397	1.00[AMR][1000 genomes]
rs57237794	1.00[AMR][1000 genomes]
rs57241231	1.00[AMR][1000 genomes]
rs57508396	1.00[AMR][1000 genomes]
rs57550064	1.00[AMR][1000 genomes]
rs57630565	1.00[AMR][1000 genomes]
rs58201175	1.00[AMR][1000 genomes]
rs59663951	1.00[AMR][1000 genomes]
rs59868470	1.00[AMR][1000 genomes]
rs60523317	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66746400-66751000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:66747400-66751000	Weak transcription	Liver	Liver
3	chr11:66748800-66751800	Enhancers	HSMMtube	muscle
4	chr11:66748800-66754000	Enhancers	HMEC	breast
5	chr11:66748800-66755800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:66748800-66756000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:66749000-66751600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:66749000-66751600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr11:66749200-66751400	Weak transcription	Left Ventricle	heart
10	chr11:66749400-66751000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:66749600-66751400	Enhancers	Spleen	Spleen
12	chr11:66749600-66755000	Enhancers	Stomach Mucosa	stomach
13	chr11:66749800-66751200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:66749800-66751400	Weak transcription	Colonic Mucosa	Colon
15	chr11:66749800-66753200	Weak transcription	Psoas Muscle	Psoas
16	chr11:66750000-66751000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:66750000-66751200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:66750000-66751200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:66750000-66751200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:66750000-66751200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:66750000-66751200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:66750000-66751200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:66750000-66751200	Weak transcription	Adipose Nuclei	Adipose
24	chr11:66750000-66751200	Enhancers	Hela-S3	cervix
25	chr11:66750000-66751200	Weak transcription	HSMM	muscle
26	chr11:66750000-66751200	Weak transcription	HUVEC	blood vessel
27	chr11:66750000-66751200	Weak transcription	Osteobl	bone
28	chr11:66750000-66751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:66750000-66751400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:66750000-66752400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:66750000-66752800	Weak transcription	Right Ventricle	heart
32	chr11:66750000-66753200	Weak transcription	Right Atrium	heart
33	chr11:66750000-66753800	Weak transcription	NH-A	brain
34	chr11:66750000-66754800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:66750400-66751200	Bivalent Enhancer	HepG2	liver
36	chr11:66750600-66751400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:66750600-66751800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:66750600-66751800	Enhancers	NHEK	skin
39	chr11:66750600-66751800	Enhancers	NHLF	lung
40	chr11:66750600-66752200	Enhancers	Lung	lung
41	chr11:66750600-66752400	Enhancers	Duodenum Mucosa	Duodenum
42	chr11:66750600-66752800	Enhancers	A549	lung
43	chr11:66750800-66751800	Enhancers	Esophagus	oesophagus
44	chr11:66750800-66752200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links